miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9511 3' -60.6 NC_002531.1 + 42922 0.66 0.696733
Target:  5'- uGCCCAGUuauucuaUGCUGC-CGGUgCGGGGuuuCCa -3'
miRNA:   3'- -UGGGUUA-------GCGACGcGUCGgGCCCU---GG- -5'
9511 3' -60.6 NC_002531.1 + 46670 0.66 0.677896
Target:  5'- cCCCucaccaCGUaggaUGCGUAgGCCgCGGGACCu -3'
miRNA:   3'- uGGGuua---GCG----ACGCGU-CGG-GCCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 8188 0.66 0.6769
Target:  5'- cACCauguuGAUCGCUGUGgaaauggccacaUAGCCCagcagccaggaguGGGACCu -3'
miRNA:   3'- -UGGg----UUAGCGACGC------------GUCGGG-------------CCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 36003 0.66 0.667925
Target:  5'- gACCUGAUggcCGUUGC-CGGCCaCGGGGgCg -3'
miRNA:   3'- -UGGGUUA---GCGACGcGUCGG-GCCCUgG- -5'
9511 3' -60.6 NC_002531.1 + 90908 0.66 0.637879
Target:  5'- uCCCAGcCGCUGCGCcuCUaucuaccaGGGACUg -3'
miRNA:   3'- uGGGUUaGCGACGCGucGGg-------CCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 69680 0.67 0.617814
Target:  5'- cCCCGAg-GC-GCGCAGCCCuuacGGGCUu -3'
miRNA:   3'- uGGGUUagCGaCGCGUCGGGc---CCUGG- -5'
9511 3' -60.6 NC_002531.1 + 69835 0.67 0.58781
Target:  5'- aGCCCGuaAggGCUGCGC-GCCuCGGGGa- -3'
miRNA:   3'- -UGGGU--UagCGACGCGuCGG-GCCCUgg -5'
9511 3' -60.6 NC_002531.1 + 90587 0.68 0.547286
Target:  5'- -gCCAAUCuCUGUGCGGaggucauucaguaCCCGGGcGCCg -3'
miRNA:   3'- ugGGUUAGcGACGCGUC-------------GGGCCC-UGG- -5'
9511 3' -60.6 NC_002531.1 + 119446 0.68 0.51916
Target:  5'- gGCCCAggUGCUcaagaGgGGCCCgaGGGACCa -3'
miRNA:   3'- -UGGGUuaGCGAcg---CgUCGGG--CCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 57950 0.69 0.509592
Target:  5'- gUCCAGcggCGCgugGCGguGUCCguggGGGACCg -3'
miRNA:   3'- uGGGUUa--GCGa--CGCguCGGG----CCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 37627 0.69 0.500099
Target:  5'- --aCAGg-GCUGCGCuGCgCCGGGACUc -3'
miRNA:   3'- uggGUUagCGACGCGuCG-GGCCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 113493 0.7 0.444935
Target:  5'- -gCCGGUCccggGCUGCGCAGCgaUUGGGugCu -3'
miRNA:   3'- ugGGUUAG----CGACGCGUCG--GGCCCugG- -5'
9511 3' -60.6 NC_002531.1 + 122970 0.71 0.361181
Target:  5'- gGCCCcGUUGCUGggagaCGCGGCCaccuucaGGGGCUg -3'
miRNA:   3'- -UGGGuUAGCGAC-----GCGUCGGg------CCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 80838 0.74 0.269733
Target:  5'- gGCCCu-UgGCUGCcaggccggaGCGGCCCaGGACCa -3'
miRNA:   3'- -UGGGuuAgCGACG---------CGUCGGGcCCUGG- -5'
9511 3' -60.6 NC_002531.1 + 113334 1.11 0.000643
Target:  5'- cACCCAAUCGCUGCGCAGCCCGGGACCg -3'
miRNA:   3'- -UGGGUUAGCGACGCGUCGGGCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.