Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9511 | 5' | -42.9 | NC_002531.1 | + | 102307 | 0.66 | 1 |
Target: 5'- gCCuGUUGguGGCUGUAGGAAAg-CGUu -3' miRNA: 3'- -GGuUAGCguCCGAUAUUUUUUgaGUA- -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 108076 | 0.66 | 1 |
Target: 5'- aCAGuUUGCAGGCUuuUAAAAAGCa--- -3' miRNA: 3'- gGUU-AGCGUCCGAu-AUUUUUUGagua -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 2179 | 0.66 | 0.999999 |
Target: 5'- uCCAcuuggcAUCGCAGGCg--AGAGuuUUCGUa -3' miRNA: 3'- -GGU------UAGCGUCCGauaUUUUuuGAGUA- -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 74596 | 0.67 | 0.999999 |
Target: 5'- gCUggUCGCAGGCUuacugguGUAGu-AACUgGUa -3' miRNA: 3'- -GGuuAGCGUCCGA-------UAUUuuUUGAgUA- -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 21538 | 0.67 | 0.999997 |
Target: 5'- aCCAGguuuucaGCAGGCUGgccagcAGAGAUUCAg -3' miRNA: 3'- -GGUUag-----CGUCCGAUau----UUUUUGAGUa -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 87224 | 0.68 | 0.99999 |
Target: 5'- ---cUCGCcuucuaacAGGCUGUGAAAuGCUCGg -3' miRNA: 3'- gguuAGCG--------UCCGAUAUUUUuUGAGUa -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 97836 | 0.68 | 0.99998 |
Target: 5'- ----cCGCAGGCUGUAAAAA--UCGg -3' miRNA: 3'- gguuaGCGUCCGAUAUUUUUugAGUa -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 31770 | 0.69 | 0.999928 |
Target: 5'- uCCAAUCaCAaGCUcUAAAAAACUCAa -3' miRNA: 3'- -GGUUAGcGUcCGAuAUUUUUUGAGUa -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 87822 | 0.72 | 0.999254 |
Target: 5'- cCCAGUCGCccGGCUccacauaaAUGAAAcACUCAc -3' miRNA: 3'- -GGUUAGCGu-CCGA--------UAUUUUuUGAGUa -5' |
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9511 | 5' | -42.9 | NC_002531.1 | + | 113368 | 1.09 | 0.045889 |
Target: 5'- gCCAAUCGCAGGCUAUAAAAAACUCAUu -3' miRNA: 3'- -GGUUAGCGUCCGAUAUUUUUUGAGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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