Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9512 | 3' | -50.9 | NC_002531.1 | + | 82071 | 0.66 | 0.979539 |
|
Target: 5'- aUACuagAAGUCCuCGGGcUCUCagGGGAUg -3' miRNA: 3'- aAUGua-UUCAGG-GCUCaAGAG--CCCUG- -5' |
|||||||
| 9512 | 3' | -50.9 | NC_002531.1 | + | 35323 | 0.67 | 0.974455 |
|
Target: 5'- -aACAgcGAGUCCCuGGacaUCUUGGGGCg -3' miRNA: 3'- aaUGUa-UUCAGGGcUCa--AGAGCCCUG- -5' |
|||||||
| 9512 | 3' | -50.9 | NC_002531.1 | + | 121098 | 0.74 | 0.709639 |
|
Target: 5'- -aACAagUAGGUCCCuAGaaCUCGGGACa -3' miRNA: 3'- aaUGU--AUUCAGGGcUCaaGAGCCCUG- -5' |
|||||||
| 9512 | 3' | -50.9 | NC_002531.1 | + | 733 | 0.76 | 0.612988 |
|
Target: 5'- gUAgAUAGGUCCCaGGUUCUaGGGACu -3' miRNA: 3'- aAUgUAUUCAGGGcUCAAGAgCCCUG- -5' |
|||||||
| 9512 | 3' | -50.9 | NC_002531.1 | + | 121068 | 0.76 | 0.612988 |
|
Target: 5'- --cCAUcuuGUCCCGAGaaCUCGGGACu -3' miRNA: 3'- aauGUAuu-CAGGGCUCaaGAGCCCUG- -5' |
|||||||
| 9512 | 3' | -50.9 | NC_002531.1 | + | 120937 | 0.78 | 0.476872 |
|
Target: 5'- -gGCGU--GUCCCGAGUUCUaGGGACc -3' miRNA: 3'- aaUGUAuuCAGGGCUCAAGAgCCCUG- -5' |
|||||||
| 9512 | 3' | -50.9 | NC_002531.1 | + | 120905 | 1.09 | 0.006999 |
|
Target: 5'- aUUACAUAAGUCCCGAGUUCUCGGGACa -3' miRNA: 3'- -AAUGUAUUCAGGGCUCAAGAGCCCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home