Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9512 | 5' | -53.9 | NC_002531.1 | + | 121063 | 0.72 | 0.652052 |
Target: 5'- uUGUCCCGAGaaCUcGGGACUUAUg- -3' miRNA: 3'- cACAGGGCUCaaGAuCCCUGGAUGaa -5' |
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9512 | 5' | -53.9 | NC_002531.1 | + | 120913 | 0.73 | 0.599047 |
Target: 5'- -aGUCCCGAGUUCUcGGGACaagAUg- -3' miRNA: 3'- caCAGGGCUCAAGAuCCCUGga-UGaa -5' |
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9512 | 5' | -53.9 | NC_002531.1 | + | 726 | 0.76 | 0.437889 |
Target: 5'- -gGUCCCaGGUUCUAGGGACUUAa-- -3' miRNA: 3'- caCAGGGcUCAAGAUCCCUGGAUgaa -5' |
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9512 | 5' | -53.9 | NC_002531.1 | + | 120939 | 1.06 | 0.005068 |
Target: 5'- cGUGUCCCGAGUUCUAGGGACCUACUUg -3' miRNA: 3'- -CACAGGGCUCAAGAUCCCUGGAUGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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