miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9514 3' -46.4 NC_002531.1 + 36295 0.66 0.999896
Target:  5'- cGACUaugACAGAcUUUACUUuuugguguUGGGCUGCu -3'
miRNA:   3'- uCUGA---UGUUUcAAAUGAG--------GCUCGACG- -5'
9514 3' -46.4 NC_002531.1 + 95049 0.66 0.999817
Target:  5'- -cACUAgGAGGUUUGCUCCucuuuuugaaccgGAGCUc- -3'
miRNA:   3'- ucUGAUgUUUCAAAUGAGG-------------CUCGAcg -5'
9514 3' -46.4 NC_002531.1 + 95622 0.66 0.999769
Target:  5'- aGGGCUgggucaguugGCGGAGg--GCUCUGGGgUGUa -3'
miRNA:   3'- -UCUGA----------UGUUUCaaaUGAGGCUCgACG- -5'
9514 3' -46.4 NC_002531.1 + 64695 0.67 0.999704
Target:  5'- aAGACUGCAAGc----CUCUGGGgaGCu -3'
miRNA:   3'- -UCUGAUGUUUcaaauGAGGCUCgaCG- -5'
9514 3' -46.4 NC_002531.1 + 128859 0.68 0.998305
Target:  5'- uAGGC-GCAAAGc---CUCCGGGCUuGCu -3'
miRNA:   3'- -UCUGaUGUUUCaaauGAGGCUCGA-CG- -5'
9514 3' -46.4 NC_002531.1 + 126730 0.68 0.998305
Target:  5'- -uGCUGCAAGGcugGCUgUCGAuGCUGCa -3'
miRNA:   3'- ucUGAUGUUUCaaaUGA-GGCU-CGACG- -5'
9514 3' -46.4 NC_002531.1 + 125260 0.69 0.997537
Target:  5'- gAGACUGCAAAcauguCUCUGuaccuGCUGCc -3'
miRNA:   3'- -UCUGAUGUUUcaaauGAGGCu----CGACG- -5'
9514 3' -46.4 NC_002531.1 + 121374 0.69 0.995855
Target:  5'- uGGCggGCAAAGUUU--UCaGAGCUGCu -3'
miRNA:   3'- uCUGa-UGUUUCAAAugAGgCUCGACG- -5'
9514 3' -46.4 NC_002531.1 + 67309 0.7 0.99512
Target:  5'- aGGAgUGCAGGGUcuuugagagAUUCUGuGCUGCa -3'
miRNA:   3'- -UCUgAUGUUUCAaa-------UGAGGCuCGACG- -5'
9514 3' -46.4 NC_002531.1 + 82021 0.73 0.966062
Target:  5'- aAGuCUACGAGucUUACUCuaagCGAGCUGCu -3'
miRNA:   3'- -UCuGAUGUUUcaAAUGAG----GCUCGACG- -5'
9514 3' -46.4 NC_002531.1 + 122791 1.14 0.010501
Target:  5'- gAGACUACAAAGUUUACUCCGAGCUGCu -3'
miRNA:   3'- -UCUGAUGUUUCAAAUGAGGCUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.