Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9514 | 3' | -46.4 | NC_002531.1 | + | 122791 | 1.14 | 0.010501 |
Target: 5'- gAGACUACAAAGUUUACUCCGAGCUGCu -3' miRNA: 3'- -UCUGAUGUUUCAAAUGAGGCUCGACG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 82021 | 0.73 | 0.966062 |
Target: 5'- aAGuCUACGAGucUUACUCuaagCGAGCUGCu -3' miRNA: 3'- -UCuGAUGUUUcaAAUGAG----GCUCGACG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 67309 | 0.7 | 0.99512 |
Target: 5'- aGGAgUGCAGGGUcuuugagagAUUCUGuGCUGCa -3' miRNA: 3'- -UCUgAUGUUUCAaa-------UGAGGCuCGACG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 121374 | 0.69 | 0.995855 |
Target: 5'- uGGCggGCAAAGUUU--UCaGAGCUGCu -3' miRNA: 3'- uCUGa-UGUUUCAAAugAGgCUCGACG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 125260 | 0.69 | 0.997537 |
Target: 5'- gAGACUGCAAAcauguCUCUGuaccuGCUGCc -3' miRNA: 3'- -UCUGAUGUUUcaaauGAGGCu----CGACG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 128859 | 0.68 | 0.998305 |
Target: 5'- uAGGC-GCAAAGc---CUCCGGGCUuGCu -3' miRNA: 3'- -UCUGaUGUUUCaaauGAGGCUCGA-CG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 126730 | 0.68 | 0.998305 |
Target: 5'- -uGCUGCAAGGcugGCUgUCGAuGCUGCa -3' miRNA: 3'- ucUGAUGUUUCaaaUGA-GGCU-CGACG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 64695 | 0.67 | 0.999704 |
Target: 5'- aAGACUGCAAGc----CUCUGGGgaGCu -3' miRNA: 3'- -UCUGAUGUUUcaaauGAGGCUCgaCG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 95622 | 0.66 | 0.999769 |
Target: 5'- aGGGCUgggucaguugGCGGAGg--GCUCUGGGgUGUa -3' miRNA: 3'- -UCUGA----------UGUUUCaaaUGAGGCUCgACG- -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 95049 | 0.66 | 0.999817 |
Target: 5'- -cACUAgGAGGUUUGCUCCucuuuuugaaccgGAGCUc- -3' miRNA: 3'- ucUGAUgUUUCAAAUGAGG-------------CUCGAcg -5' |
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9514 | 3' | -46.4 | NC_002531.1 | + | 36295 | 0.66 | 0.999896 |
Target: 5'- cGACUaugACAGAcUUUACUUuuugguguUGGGCUGCu -3' miRNA: 3'- uCUGA---UGUUUcAAAUGAG--------GCUCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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