miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
952 3' -54.2 NC_000902.1 + 42322 0.66 0.830648
Target:  5'- aCUGUCUuuuccGGCGaCAAUCCCGAucccCGCa -3'
miRNA:   3'- aGAUAGGuc---CUGCgGUUAGGGCU----GCG- -5'
952 3' -54.2 NC_000902.1 + 36535 0.66 0.821604
Target:  5'- ---uUCCAGGcuuGCGCCAgcAUCCgGucuCGCc -3'
miRNA:   3'- agauAGGUCC---UGCGGU--UAGGgCu--GCG- -5'
952 3' -54.2 NC_000902.1 + 52646 0.66 0.802935
Target:  5'- aUUGUCCuGGugGCgGAuaacaUCCCuGACGg -3'
miRNA:   3'- aGAUAGGuCCugCGgUU-----AGGG-CUGCg -5'
952 3' -54.2 NC_000902.1 + 53334 0.66 0.79333
Target:  5'- aCUA-CCGGaacuGAUGCaCGAUCCgGAUGCa -3'
miRNA:   3'- aGAUaGGUC----CUGCG-GUUAGGgCUGCG- -5'
952 3' -54.2 NC_000902.1 + 50365 0.67 0.773633
Target:  5'- cCUGUCCGGGAUGaauAUCgCCGGgaGCg -3'
miRNA:   3'- aGAUAGGUCCUGCgguUAG-GGCUg-CG- -5'
952 3' -54.2 NC_000902.1 + 20553 0.67 0.753359
Target:  5'- gCUcUCCAGcucaACGCCAAUUgcaCGACGCc -3'
miRNA:   3'- aGAuAGGUCc---UGCGGUUAGg--GCUGCG- -5'
952 3' -54.2 NC_000902.1 + 23593 0.68 0.689968
Target:  5'- -aUAUCCAGGGaacacCGUCAGcagagccaCCGACGCa -3'
miRNA:   3'- agAUAGGUCCU-----GCGGUUag------GGCUGCG- -5'
952 3' -54.2 NC_000902.1 + 55918 0.7 0.591841
Target:  5'- ---uUCuCAGGugGCagccaguaccGUCCCGGCGCg -3'
miRNA:   3'- agauAG-GUCCugCGgu--------UAGGGCUGCG- -5'
952 3' -54.2 NC_000902.1 + 29577 0.7 0.569088
Target:  5'- --cGUCC-GGACGUCAGaaacgccUCCUGugGCg -3'
miRNA:   3'- agaUAGGuCCUGCGGUU-------AGGGCugCG- -5'
952 3' -54.2 NC_000902.1 + 48930 0.72 0.475912
Target:  5'- uUUUGUCCAuuGACGCCGA-CCCGcagcACGCa -3'
miRNA:   3'- -AGAUAGGUc-CUGCGGUUaGGGC----UGCG- -5'
952 3' -54.2 NC_000902.1 + 40369 0.72 0.465896
Target:  5'- ---cUCCAGaGACGCCGGaCCUGGCGg -3'
miRNA:   3'- agauAGGUC-CUGCGGUUaGGGCUGCg -5'
952 3' -54.2 NC_000902.1 + 17262 1.11 0.001113
Target:  5'- cUCUAUCCAGGACGCCAAUCCCGACGCc -3'
miRNA:   3'- -AGAUAGGUCCUGCGGUUAGGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.