miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
955	3'	-58.5	NC_000902.1	+	36420	0.66	0.579261
	Target:  5'- aUGAUGCUgugagggcagugaUUCUGGCgagaCCGGAuGCUGg -3' miRNA:   3'- cGCUACGG-------------AAGGCCGa---GGCCU-CGACg -5'
955	3'	-58.5	NC_000902.1	+	20866	0.66	0.5687
	Target:  5'- uGCGG-GCCUUuuuuauaucugcgCCGGgUCUGGuGCUGa -3' miRNA:   3'- -CGCUaCGGAA-------------GGCCgAGGCCuCGACg -5'
955	3'	-58.5	NC_000902.1	+	40333	0.67	0.538373
	Target:  5'- uGCGGUacaaCUgacgCUGGCUCCGGuGCcauUGCa -3' miRNA:   3'- -CGCUAcg--GAa---GGCCGAGGCCuCG---ACG- -5'
955	3'	-58.5	NC_000902.1	+	49495	0.67	0.494505
	Target:  5'- ----cGCCaccggaucaacagaUUCUGGUUgCGGGGCUGCg -3' miRNA:   3'- cgcuaCGG--------------AAGGCCGAgGCCUCGACG- -5'
955	3'	-58.5	NC_000902.1	+	44508	0.68	0.448514
	Target:  5'- -gGGUGCCUUUCGGCUgauggCUGGAGg-GUg -3' miRNA:   3'- cgCUACGGAAGGCCGA-----GGCCUCgaCG- -5'
955	3'	-58.5	NC_000902.1	+	36174	0.68	0.448514
	Target:  5'- cCGGUaucugGCUgcgUCCGGCuUUCGGAGCgacgGCa -3' miRNA:   3'- cGCUA-----CGGa--AGGCCG-AGGCCUCGa---CG- -5'
955	3'	-58.5	NC_000902.1	+	29402	0.69	0.402302
	Target:  5'- ----cGCUUUCCGGCacUCUGGcGCUGUa -3' miRNA:   3'- cgcuaCGGAAGGCCG--AGGCCuCGACG- -5'
955	3'	-58.5	NC_000902.1	+	27449	0.69	0.400517
	Target:  5'- aGCGGUGUCUgccagucgggggCCGGUUgcauuauccacgCCGGAGgUGCc -3' miRNA:   3'- -CGCUACGGAa-----------GGCCGA------------GGCCUCgACG- -5'
955	3'	-58.5	NC_000902.1	+	50502	0.75	0.174409
	Target:  5'- aGCGgcGUUUUCCGGUgCCGGAGCuUGUc -3' miRNA:   3'- -CGCuaCGGAAGGCCGaGGCCUCG-ACG- -5'
955	3'	-58.5	NC_000902.1	+	25195	1.12	0.000321
	Target:  5'- cGCGAUGCCUUCCGGCUCCGGAGCUGCc -3' miRNA:   3'- -CGCUACGGAAGGCCGAGGCCUCGACG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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