Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9563 | 5' | -55.9 | NC_002554.1 | + | 4488 | 0.67 | 0.164863 |
Target: 5'- aUCCuugaaaAACAGCGGg-ACCUCaACGaCCCa -3' miRNA: 3'- -AGG------UUGUCGCCagUGGAGcUGCaGGG- -5' |
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9563 | 5' | -55.9 | NC_002554.1 | + | 6252 | 0.67 | 0.1549 |
Target: 5'- uUCCcGCGGUGGagCACCaugagcgCGGCGUCUg -3' miRNA: 3'- -AGGuUGUCGCCa-GUGGa------GCUGCAGGg -5' |
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9563 | 5' | -55.9 | NC_002554.1 | + | 1863 | 0.74 | 0.045107 |
Target: 5'- gCCuuCAGCGGUCuuUUCGGCG-CCCu -3' miRNA: 3'- aGGuuGUCGCCAGugGAGCUGCaGGG- -5' |
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9563 | 5' | -55.9 | NC_002554.1 | + | 2239 | 0.78 | 0.022177 |
Target: 5'- gUUCAACGGCGGUUGCCUCcugguggcgcuCGUCCCc -3' miRNA: 3'- -AGGUUGUCGCCAGUGGAGcu---------GCAGGG- -5' |
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9563 | 5' | -55.9 | NC_002554.1 | + | 2241 | 1.13 | 0.00003 |
Target: 5'- uUCCAACAGCGGUCACCUCGACGUCCCa -3' miRNA: 3'- -AGGUUGUCGCCAGUGGAGCUGCAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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