miRNA: 3'- -CCU----UUUC-UUGG-GA-GACCUUUGGUCAc -5'
miRNA: 3'- -CCUUUUCUu-GGGAG--ACCUU------------UGGU-CAC- -5'
miRNA: 3'- -CCUUUUCUUGGGAGACCUUUGGUCAC- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9572 | 3' | -47.7 | NC_002554.1 | + | 2208 | 0.67 | 0.514541 |
|
Target: 5'- gGGAcgucGAGGuGACCgCUgUUGGAAACCAGUu -3' miRNA: 3'- -CCU----UUUC-UUGG-GA-GACCUUUGGUCAc -5' |
|||||||
| 9572 | 3' | -47.7 | NC_002554.1 | + | 2568 | 0.68 | 0.452346 |
|
Target: 5'- cGGGGAAGAucCCCUCcuUGGAGgggagcucacccGCCAcGUGc -3' miRNA: 3'- -CCUUUUCUu-GGGAG--ACCUU------------UGGU-CAC- -5' |
|||||||
| 9572 | 3' | -47.7 | NC_002554.1 | + | 5619 | 1.14 | 0.000219 |
|
Target: 5'- cGGAAAAGAACCCUCUGGAAACCAGUGg -3' miRNA: 3'- -CCUUUUCUUGGGAGACCUUUGGUCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home