miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9586 3' -48.2 NC_002577.1 + 138553 0.66 0.999683
Target:  5'- -cCUUCUUCGCGcACCUCaUCca-GGUc -3'
miRNA:   3'- caGAAGAAGUGCaUGGAG-AGauaCCG- -5'
9586 3' -48.2 NC_002577.1 + 158784 0.66 0.999683
Target:  5'- -cCUUCUUCGCGcACCUCaUCca-GGUc -3'
miRNA:   3'- caGAAGAAGUGCaUGGAG-AGauaCCG- -5'
9586 3' -48.2 NC_002577.1 + 97750 0.73 0.934693
Target:  5'- cGUCUUCUUCGCGcgucGCCUCggcguccgugCUG-GGCg -3'
miRNA:   3'- -CAGAAGAAGUGCa---UGGAGa---------GAUaCCG- -5'
9586 3' -48.2 NC_002577.1 + 130891 0.73 0.934693
Target:  5'- ----cCUaCACGUACCUCaCUAUGGCc -3'
miRNA:   3'- cagaaGAaGUGCAUGGAGaGAUACCG- -5'
9586 3' -48.2 NC_002577.1 + 2723 0.73 0.934693
Target:  5'- ----cCUaCACGUACCUCaCUAUGGCc -3'
miRNA:   3'- cagaaGAaGUGCAUGGAGaGAUACCG- -5'
9586 3' -48.2 NC_002577.1 + 2946 1.13 0.010445
Target:  5'- gGUCUUCUUCACGUACCUCUCUAUGGCu -3'
miRNA:   3'- -CAGAAGAAGUGCAUGGAGAGAUACCG- -5'
9586 3' -48.2 NC_002577.1 + 130668 1.13 0.010445
Target:  5'- gGUCUUCUUCACGUACCUCUCUAUGGCu -3'
miRNA:   3'- -CAGAAGAAGUGCAUGGAGAGAUACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.