miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9586 5' -53.6 NC_002577.1 + 11654 0.66 0.965923
Target:  5'- aGGCCGccgGGgagGAGGU-UGUGgGGGCg -3'
miRNA:   3'- aCCGGUa--UCa--CUCCAuGCACaUCCGa -5'
9586 5' -53.6 NC_002577.1 + 156716 0.66 0.965923
Target:  5'- gGGCUAaGGgGAGGUG-GUGUAGGg- -3'
miRNA:   3'- aCCGGUaUCaCUCCAUgCACAUCCga -5'
9586 5' -53.6 NC_002577.1 + 140622 0.66 0.965923
Target:  5'- gGGCUAaGGgGAGGUG-GUGUAGGg- -3'
miRNA:   3'- aCCGGUaUCaCUCCAUgCACAUCCga -5'
9586 5' -53.6 NC_002577.1 + 121959 0.66 0.965923
Target:  5'- aGGCCGccgGGgagGAGGU-UGUGgGGGCg -3'
miRNA:   3'- aCCGGUa--UCa--CUCCAuGCACaUCCGa -5'
9586 5' -53.6 NC_002577.1 + 1782 0.67 0.946689
Target:  5'- gGGCC-UGGcaGGGGUAgG-GUAGGCg -3'
miRNA:   3'- aCCGGuAUCa-CUCCAUgCaCAUCCGa -5'
9586 5' -53.6 NC_002577.1 + 131831 0.67 0.946689
Target:  5'- gGGCC-UGGcaGGGGUAgG-GUAGGCg -3'
miRNA:   3'- aCCGGuAUCa-CUCCAUgCaCAUCCGa -5'
9586 5' -53.6 NC_002577.1 + 130858 0.67 0.942126
Target:  5'- -aGCCAUAGaGAGGUACGUGaAGa-- -3'
miRNA:   3'- acCGGUAUCaCUCCAUGCACaUCcga -5'
9586 5' -53.6 NC_002577.1 + 2756 0.67 0.942126
Target:  5'- -aGCCAUAGaGAGGUACGUGaAGa-- -3'
miRNA:   3'- acCGGUAUCaCUCCAUGCACaUCcga -5'
9586 5' -53.6 NC_002577.1 + 141735 0.67 0.932261
Target:  5'- gGaGCCGUGGcUGuGGUGUGUGUAGGg- -3'
miRNA:   3'- aC-CGGUAUC-ACuCCAUGCACAUCCga -5'
9586 5' -53.6 NC_002577.1 + 155603 0.67 0.932261
Target:  5'- gGaGCCGUGGcUGuGGUGUGUGUAGGg- -3'
miRNA:   3'- aC-CGGUAUC-ACuCCAUGCACAUCCga -5'
9586 5' -53.6 NC_002577.1 + 39962 0.68 0.9214
Target:  5'- gUGGCCcgGGacaUGAGGUaucaagaguAUGUGUAGuGCg -3'
miRNA:   3'- -ACCGGuaUC---ACUCCA---------UGCACAUC-CGa -5'
9586 5' -53.6 NC_002577.1 + 59005 0.7 0.810016
Target:  5'- aGGCCAUAGggaAGGU-CGuUGUGGGUg -3'
miRNA:   3'- aCCGGUAUCac-UCCAuGC-ACAUCCGa -5'
9586 5' -53.6 NC_002577.1 + 2910 1.09 0.004758
Target:  5'- aUGGCCAUAGUGAGGUACGUGUAGGCUa -3'
miRNA:   3'- -ACCGGUAUCACUCCAUGCACAUCCGA- -5'
9586 5' -53.6 NC_002577.1 + 130704 1.09 0.004758
Target:  5'- aUGGCCAUAGUGAGGUACGUGUAGGCUa -3'
miRNA:   3'- -ACCGGUAUCACUCCAUGCACAUCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.