Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9587 | 5' | -58.4 | NC_002577.1 | + | 10520 | 0.66 | 0.802049 |
Target: 5'- -cGCCGcGGGUgcgGGGC-CGGGGGGAAa -3' miRNA: 3'- gcCGGCuCCCA---UCCGcGUCUCCUUUa -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 154860 | 0.66 | 0.810787 |
Target: 5'- gGGggGGGGGgggGGGCGCGGgucgGGGAAAg -3' miRNA: 3'- gCCggCUCCCa--UCCGCGUC----UCCUUUa -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 1614 | 0.66 | 0.818517 |
Target: 5'- aGGCCcuaacccuacucgGGGGGgggGGGgGgGGAGGggGg -3' miRNA: 3'- gCCGG-------------CUCCCa--UCCgCgUCUCCuuUa -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 131831 | 0.66 | 0.819368 |
Target: 5'- gGGCCuggcagggguAGGGUAGGCGCGaAGGuuGg -3' miRNA: 3'- gCCGGc---------UCCCAUCCGCGUcUCCuuUa -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 9509 | 0.69 | 0.657809 |
Target: 5'- gGGCuUGGGGGgggGGGgGgGGAGGGAGg -3' miRNA: 3'- gCCG-GCUCCCa--UCCgCgUCUCCUUUa -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 131027 | 0.69 | 0.641647 |
Target: 5'- gGGCCuuuAGGGUgaugguugggcccuuAGGgGCAGGGGAGGc -3' miRNA: 3'- gCCGGc--UCCCA---------------UCCgCGUCUCCUUUa -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 140592 | 0.7 | 0.60728 |
Target: 5'- gGGCUaaGGGGGgguGGCGUAGgAGGAGGg -3' miRNA: 3'- gCCGG--CUCCCau-CCGCGUC-UCCUUUa -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 140494 | 0.7 | 0.57712 |
Target: 5'- aCGGCaGAGGcGUGGGgGgAGGGGAAc- -3' miRNA: 3'- -GCCGgCUCC-CAUCCgCgUCUCCUUua -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 140622 | 0.7 | 0.557193 |
Target: 5'- gGGCUaAGGGgagguGGUGUAGGGGGAGUg -3' miRNA: 3'- gCCGGcUCCCau---CCGCGUCUCCUUUA- -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 2899 | 0.75 | 0.343689 |
Target: 5'- -cGCCGAGGGUAGGCGUcGAGaAAAUc -3' miRNA: 3'- gcCGGCUCCCAUCCGCGuCUCcUUUA- -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 138501 | 0.75 | 0.328734 |
Target: 5'- aGGCCGGGGG-AGGCcgggGUAGGGGAu-- -3' miRNA: 3'- gCCGGCUCCCaUCCG----CGUCUCCUuua -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 130560 | 1.05 | 0.003239 |
Target: 5'- uCGGCCGAGGGUAGGCGCAGAGGAAAUc -3' miRNA: 3'- -GCCGGCUCCCAUCCGCGUCUCCUUUA- -5' |
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9587 | 5' | -58.4 | NC_002577.1 | + | 135660 | 0.66 | 0.827781 |
Target: 5'- gGGCCGAGG--AGGCuGCgaGGuAGGAGAg -3' miRNA: 3'- gCCGGCUCCcaUCCG-CG--UC-UCCUUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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