miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9589 5' -56.7 NC_002577.1 + 122985 0.67 0.873612
Target:  5'- aGGGAUCGGGacgauCCGCGgaCGAgaacgaugGGGCGu -3'
miRNA:   3'- -CCCUAGCUCgu---GGUGCg-GCUa-------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 10223 0.67 0.869314
Target:  5'- aGGGAUgGGGaaaaagugaagucCCGCGCUGGcucUGGACGa -3'
miRNA:   3'- -CCCUAgCUCgu-----------GGUGCGGCU---ACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 123391 0.67 0.869314
Target:  5'- aGGGAUgGGGaaaaagugaagucCCGCGCUGGcucUGGACGa -3'
miRNA:   3'- -CCCUAgCUCgu-----------GGUGCGGCU---ACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 103128 0.67 0.866407
Target:  5'- -aGAUCGuGGUGaCGCGCCGuAUGGGCGg -3'
miRNA:   3'- ccCUAGC-UCGUgGUGCGGC-UACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 159714 0.67 0.866407
Target:  5'- cGGGAU-GAGC-CCGgcCGCCGuacuuUGGGCa -3'
miRNA:   3'- -CCCUAgCUCGuGGU--GCGGCu----ACCUGc -5'
9589 5' -56.7 NC_002577.1 + 137624 0.67 0.866407
Target:  5'- cGGGAU-GAGC-CCGgcCGCCGuacuuUGGGCa -3'
miRNA:   3'- -CCCUAgCUCGuGGU--GCGGCu----ACCUGc -5'
9589 5' -56.7 NC_002577.1 + 3664 0.68 0.851402
Target:  5'- uGGGAguuuguuugcUCGAGC-CC-UGCCGgcGGACu -3'
miRNA:   3'- -CCCU----------AGCUCGuGGuGCGGCuaCCUGc -5'
9589 5' -56.7 NC_002577.1 + 129949 0.68 0.851402
Target:  5'- uGGGAguuuguuugcUCGAGC-CC-UGCCGgcGGACu -3'
miRNA:   3'- -CCCU----------AGCUCGuGGuGCGGCuaCCUGc -5'
9589 5' -56.7 NC_002577.1 + 105968 0.68 0.843612
Target:  5'- gGGGAgaGAGCgGCCGCGCUGGgaaGGcCGg -3'
miRNA:   3'- -CCCUagCUCG-UGGUGCGGCUa--CCuGC- -5'
9589 5' -56.7 NC_002577.1 + 161018 0.68 0.810688
Target:  5'- cGGA--GAGCGCCGCcugggcggGCCGGUGGAg- -3'
miRNA:   3'- cCCUagCUCGUGGUG--------CGGCUACCUgc -5'
9589 5' -56.7 NC_002577.1 + 136320 0.68 0.810688
Target:  5'- cGGA--GAGCGCCGCcugggcggGCCGGUGGAg- -3'
miRNA:   3'- cCCUagCUCGUGGUG--------CGGCUACCUgc -5'
9589 5' -56.7 NC_002577.1 + 26182 0.69 0.790608
Target:  5'- -cGAUaCGAGCGCCuucaguaacgACGCCGuccacaccgugacuGUGGACGg -3'
miRNA:   3'- ccCUA-GCUCGUGG----------UGCGGC--------------UACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 130209 0.71 0.689368
Target:  5'- ---cUCGGGCACCGCaCCGAaGGAUGg -3'
miRNA:   3'- cccuAGCUCGUGGUGcGGCUaCCUGC- -5'
9589 5' -56.7 NC_002577.1 + 3405 0.71 0.689368
Target:  5'- ---cUCGGGCACCGCaCCGAaGGAUGg -3'
miRNA:   3'- cccuAGCUCGUGGUGcGGCUaCCUGC- -5'
9589 5' -56.7 NC_002577.1 + 107134 0.71 0.669556
Target:  5'- uGGGG-CGGGCGCUACuaaGCaGAUGGAUGg -3'
miRNA:   3'- -CCCUaGCUCGUGGUG---CGgCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 128987 0.74 0.492902
Target:  5'- aGGGAUggccgCGGGUACgCGCGCCGAguauggggGGGCGc -3'
miRNA:   3'- -CCCUA-----GCUCGUG-GUGCGGCUa-------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 4626 0.75 0.456176
Target:  5'- aGGGAUggccgCGGGUACgCGCGCCGAguaugggGGGCGc -3'
miRNA:   3'- -CCCUA-----GCUCGUG-GUGCGGCUa------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 137942 0.84 0.148634
Target:  5'- -uGAUUGAGCGCUGCGUCGGUGGGCGa -3'
miRNA:   3'- ccCUAGCUCGUGGUGCGGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 159395 0.84 0.148634
Target:  5'- -uGAUUGAGCGCUGCGUCGGUGGGCGa -3'
miRNA:   3'- ccCUAGCUCGUGGUGCGGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 3180 0.84 0.144955
Target:  5'- uGGAUCcugucaucaAGCACCACGUCGAUGGACGg -3'
miRNA:   3'- cCCUAGc--------UCGUGGUGCGGCUACCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.