Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 160684 | 0.66 | 0.987594 |
Target: 5'- cCGUC-CAuaa--UGCGCGCGGGGucgcGCCa -3' miRNA: 3'- -GCAGaGUucaugACGCGCGUUCC----UGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 136654 | 0.66 | 0.987594 |
Target: 5'- cCGUC-CAuaa--UGCGCGCGGGGucgcGCCa -3' miRNA: 3'- -GCAGaGUucaugACGCGCGUUCC----UGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 13648 | 0.66 | 0.98598 |
Target: 5'- aGagUCGGGUGaugagGCGcCGUAAGGAUCa -3' miRNA: 3'- gCagAGUUCAUga---CGC-GCGUUCCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 16936 | 0.66 | 0.98017 |
Target: 5'- aGUCgUGAGacgcucGCUGCGCGgCAGGGcCCa -3' miRNA: 3'- gCAGaGUUCa-----UGACGCGC-GUUCCuGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 32377 | 0.66 | 0.98017 |
Target: 5'- uGUCUUAgcuggaAGUACuUGCGCGaGAGGAa- -3' miRNA: 3'- gCAGAGU------UCAUG-ACGCGCgUUCCUgg -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 130495 | 0.67 | 0.973825 |
Target: 5'- aCGcCUCGaacaccggacgaaggAGggaACUGCGCGCGucuGGACUu -3' miRNA: 3'- -GCaGAGU---------------UCa--UGACGCGCGUu--CCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 3118 | 0.67 | 0.973825 |
Target: 5'- aCGcCUCGaacaccggacgaaggAGggaACUGCGCGCGucuGGACUu -3' miRNA: 3'- -GCaGAGU---------------UCa--UGACGCGCGUu--CCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 157047 | 0.67 | 0.969853 |
Target: 5'- aCG-CUau-GUugUgGCGCGCGGGGGCUc -3' miRNA: 3'- -GCaGAguuCAugA-CGCGCGUUCCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 140291 | 0.67 | 0.969853 |
Target: 5'- aCG-CUau-GUugUgGCGCGCGGGGGCUc -3' miRNA: 3'- -GCaGAguuCAugA-CGCGCGUUCCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 10364 | 0.69 | 0.933834 |
Target: 5'- -uUCUUucGUAgaGCGcCGCAAGGGCa -3' miRNA: 3'- gcAGAGuuCAUgaCGC-GCGUUCCUGg -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 123250 | 0.69 | 0.933834 |
Target: 5'- -uUCUUucGUAgaGCGcCGCAAGGGCa -3' miRNA: 3'- gcAGAGuuCAUgaCGC-GCGUUCCUGg -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 134184 | 0.69 | 0.923191 |
Target: 5'- aGUCgacauuugCGAGca-UGCGCGCGGcGGACCc -3' miRNA: 3'- gCAGa-------GUUCaugACGCGCGUU-CCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 163144 | 0.69 | 0.923191 |
Target: 5'- aGUCgacauuugCGAGca-UGCGCGCGGcGGACCc -3' miRNA: 3'- gCAGa-------GUUCaugACGCGCGUU-CCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 96698 | 0.7 | 0.917499 |
Target: 5'- gGUCUCGuGU-CcGCGCGC--GGACCa -3' miRNA: 3'- gCAGAGUuCAuGaCGCGCGuuCCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 30534 | 0.7 | 0.911562 |
Target: 5'- --aCUaCAAGUACauUGCGCGCucucGAGGACa -3' miRNA: 3'- gcaGA-GUUCAUG--ACGCGCG----UUCCUGg -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 127016 | 0.7 | 0.898959 |
Target: 5'- aCGUCUCccuccgauucaaAAGUACUGCG-GCAc-GACCu -3' miRNA: 3'- -GCAGAG------------UUCAUGACGCgCGUucCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 6598 | 0.7 | 0.898959 |
Target: 5'- aCGUCUCccuccgauucaaAAGUACUGCG-GCAc-GACCu -3' miRNA: 3'- -GCAGAG------------UUCAUGACGCgCGUucCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 37536 | 0.7 | 0.892298 |
Target: 5'- uCGUCUgGcg-GCUGCGUGCGuuGGACUa -3' miRNA: 3'- -GCAGAgUucaUGACGCGCGUu-CCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 4841 | 1.13 | 0.003863 |
Target: 5'- uCGUCUCAAGUACUGCGCGCAAGGACCg -3' miRNA: 3'- -GCAGAGUUCAUGACGCGCGUUCCUGG- -5' |
|||||||
9590 | 5' | -52.4 | NC_002577.1 | + | 128772 | 1.13 | 0.003863 |
Target: 5'- uCGUCUCAAGUACUGCGCGCAAGGACCg -3' miRNA: 3'- -GCAGAGUUCAUGACGCGCGUUCCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home