miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9590 5' -52.4 NC_002577.1 + 160684 0.66 0.987594
Target:  5'- cCGUC-CAuaa--UGCGCGCGGGGucgcGCCa -3'
miRNA:   3'- -GCAGaGUucaugACGCGCGUUCC----UGG- -5'
9590 5' -52.4 NC_002577.1 + 136654 0.66 0.987594
Target:  5'- cCGUC-CAuaa--UGCGCGCGGGGucgcGCCa -3'
miRNA:   3'- -GCAGaGUucaugACGCGCGUUCC----UGG- -5'
9590 5' -52.4 NC_002577.1 + 13648 0.66 0.98598
Target:  5'- aGagUCGGGUGaugagGCGcCGUAAGGAUCa -3'
miRNA:   3'- gCagAGUUCAUga---CGC-GCGUUCCUGG- -5'
9590 5' -52.4 NC_002577.1 + 32377 0.66 0.98017
Target:  5'- uGUCUUAgcuggaAGUACuUGCGCGaGAGGAa- -3'
miRNA:   3'- gCAGAGU------UCAUG-ACGCGCgUUCCUgg -5'
9590 5' -52.4 NC_002577.1 + 16936 0.66 0.98017
Target:  5'- aGUCgUGAGacgcucGCUGCGCGgCAGGGcCCa -3'
miRNA:   3'- gCAGaGUUCa-----UGACGCGC-GUUCCuGG- -5'
9590 5' -52.4 NC_002577.1 + 3118 0.67 0.973825
Target:  5'- aCGcCUCGaacaccggacgaaggAGggaACUGCGCGCGucuGGACUu -3'
miRNA:   3'- -GCaGAGU---------------UCa--UGACGCGCGUu--CCUGG- -5'
9590 5' -52.4 NC_002577.1 + 130495 0.67 0.973825
Target:  5'- aCGcCUCGaacaccggacgaaggAGggaACUGCGCGCGucuGGACUu -3'
miRNA:   3'- -GCaGAGU---------------UCa--UGACGCGCGUu--CCUGG- -5'
9590 5' -52.4 NC_002577.1 + 157047 0.67 0.969853
Target:  5'- aCG-CUau-GUugUgGCGCGCGGGGGCUc -3'
miRNA:   3'- -GCaGAguuCAugA-CGCGCGUUCCUGG- -5'
9590 5' -52.4 NC_002577.1 + 140291 0.67 0.969853
Target:  5'- aCG-CUau-GUugUgGCGCGCGGGGGCUc -3'
miRNA:   3'- -GCaGAguuCAugA-CGCGCGUUCCUGG- -5'
9590 5' -52.4 NC_002577.1 + 123250 0.69 0.933834
Target:  5'- -uUCUUucGUAgaGCGcCGCAAGGGCa -3'
miRNA:   3'- gcAGAGuuCAUgaCGC-GCGUUCCUGg -5'
9590 5' -52.4 NC_002577.1 + 10364 0.69 0.933834
Target:  5'- -uUCUUucGUAgaGCGcCGCAAGGGCa -3'
miRNA:   3'- gcAGAGuuCAUgaCGC-GCGUUCCUGg -5'
9590 5' -52.4 NC_002577.1 + 134184 0.69 0.923191
Target:  5'- aGUCgacauuugCGAGca-UGCGCGCGGcGGACCc -3'
miRNA:   3'- gCAGa-------GUUCaugACGCGCGUU-CCUGG- -5'
9590 5' -52.4 NC_002577.1 + 163144 0.69 0.923191
Target:  5'- aGUCgacauuugCGAGca-UGCGCGCGGcGGACCc -3'
miRNA:   3'- gCAGa-------GUUCaugACGCGCGUU-CCUGG- -5'
9590 5' -52.4 NC_002577.1 + 96698 0.7 0.917499
Target:  5'- gGUCUCGuGU-CcGCGCGC--GGACCa -3'
miRNA:   3'- gCAGAGUuCAuGaCGCGCGuuCCUGG- -5'
9590 5' -52.4 NC_002577.1 + 30534 0.7 0.911562
Target:  5'- --aCUaCAAGUACauUGCGCGCucucGAGGACa -3'
miRNA:   3'- gcaGA-GUUCAUG--ACGCGCG----UUCCUGg -5'
9590 5' -52.4 NC_002577.1 + 127016 0.7 0.898959
Target:  5'- aCGUCUCccuccgauucaaAAGUACUGCG-GCAc-GACCu -3'
miRNA:   3'- -GCAGAG------------UUCAUGACGCgCGUucCUGG- -5'
9590 5' -52.4 NC_002577.1 + 6598 0.7 0.898959
Target:  5'- aCGUCUCccuccgauucaaAAGUACUGCG-GCAc-GACCu -3'
miRNA:   3'- -GCAGAG------------UUCAUGACGCgCGUucCUGG- -5'
9590 5' -52.4 NC_002577.1 + 37536 0.7 0.892298
Target:  5'- uCGUCUgGcg-GCUGCGUGCGuuGGACUa -3'
miRNA:   3'- -GCAGAgUucaUGACGCGCGUu-CCUGG- -5'
9590 5' -52.4 NC_002577.1 + 4841 1.13 0.003863
Target:  5'- uCGUCUCAAGUACUGCGCGCAAGGACCg -3'
miRNA:   3'- -GCAGAGUUCAUGACGCGCGUUCCUGG- -5'
9590 5' -52.4 NC_002577.1 + 128772 1.13 0.003863
Target:  5'- uCGUCUCAAGUACUGCGCGCAAGGACCg -3'
miRNA:   3'- -GCAGAGUUCAUGACGCGCGUUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.