Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9591 | 3' | -59.1 | NC_002577.1 | + | 128492 | 0.66 | 0.799492 |
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Target: 5'- -cCCuGUCCgUCCCGGuUgUCCUAGAa -3' miRNA: 3'- caGGuCAGGaAGGGCCcAgGGGAUCU- -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 5121 | 0.66 | 0.799492 |
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Target: 5'- -cCCuGUCCgUCCCGGuUgUCCUAGAa -3' miRNA: 3'- caGGuCAGGaAGGGCCcAgGGGAUCU- -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 161133 | 0.66 | 0.790693 |
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Target: 5'- -cCCGGUUCgggucgaaCCgGGGUCCCCcGGGg -3' miRNA: 3'- caGGUCAGGaa------GGgCCCAGGGGaUCU- -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 136205 | 0.66 | 0.790693 |
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Target: 5'- -cCCGGUUCgggucgaaCCgGGGUCCCCcGGGg -3' miRNA: 3'- caGGUCAGGaa------GGgCCCAGGGGaUCU- -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 131746 | 0.66 | 0.781758 |
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Target: 5'- ---aGGUCCUaacCCCGGG-CCCCUAa- -3' miRNA: 3'- caggUCAGGAa--GGGCCCaGGGGAUcu -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 1868 | 0.66 | 0.781758 |
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Target: 5'- ---aGGUCCUaacCCCGGG-CCCCUAa- -3' miRNA: 3'- caggUCAGGAa--GGGCCCaGGGGAUcu -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 12073 | 0.69 | 0.637181 |
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Target: 5'- cGUCCGcGUCCgcgCCCGGGUCgucgCCCg--- -3' miRNA: 3'- -CAGGU-CAGGaa-GGGCCCAG----GGGaucu -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 121625 | 0.69 | 0.637181 |
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Target: 5'- cGUCCGcGUCCgcgCCCGGGUCgucgCCCg--- -3' miRNA: 3'- -CAGGU-CAGGaa-GGGCCCAG----GGGaucu -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 5346 | 1.09 | 0.001741 |
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Target: 5'- cGUCCAGUCCUUCCCGGGUCCCCUAGAg -3' miRNA: 3'- -CAGGUCAGGAAGGGCCCAGGGGAUCU- -5' |
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| 9591 | 3' | -59.1 | NC_002577.1 | + | 128268 | 1.09 | 0.001741 |
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Target: 5'- cGUCCAGUCCUUCCCGGGUCCCCUAGAg -3' miRNA: 3'- -CAGGUCAGGAAGGGCCCAGGGGAUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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