miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9591 5' -53.8 NC_002577.1 + 122997 0.65 0.978578
Target:  5'- cGUUCUcgugcgagggaucGGGACGAuCCGcGGACGagaacGAUGGGg -3'
miRNA:   3'- -CAAGA-------------UCCUGUU-GGC-CCUGC-----CUGUCC- -5'
9591 5' -53.8 NC_002577.1 + 10617 0.65 0.978578
Target:  5'- cGUUCUcgugcgagggaucGGGACGAuCCGcGGACGagaacGAUGGGg -3'
miRNA:   3'- -CAAGA-------------UCCUGUU-GGC-CCUGC-----CUGUCC- -5'
9591 5' -53.8 NC_002577.1 + 76896 0.66 0.976444
Target:  5'- --gCUGGaGAUAACaGGGACGGGCu-- -3'
miRNA:   3'- caaGAUC-CUGUUGgCCCUGCCUGucc -5'
9591 5' -53.8 NC_002577.1 + 64443 0.66 0.973893
Target:  5'- --aCUGGGGCAACauaauGGGugGGAgAa- -3'
miRNA:   3'- caaGAUCCUGUUGg----CCCugCCUgUcc -5'
9591 5' -53.8 NC_002577.1 + 75946 0.66 0.973893
Target:  5'- --aCUAGGGCAugCGaaaaGAUGGcCAGGc -3'
miRNA:   3'- caaGAUCCUGUugGCc---CUGCCuGUCC- -5'
9591 5' -53.8 NC_002577.1 + 102399 0.66 0.971149
Target:  5'- --gUUGGGAgAGauUCGGGACgGGACAGa -3'
miRNA:   3'- caaGAUCCUgUU--GGCCCUG-CCUGUCc -5'
9591 5' -53.8 NC_002577.1 + 146241 0.66 0.965049
Target:  5'- ---aUGGGAUuACCGGaaGACGaGAUAGGg -3'
miRNA:   3'- caagAUCCUGuUGGCC--CUGC-CUGUCC- -5'
9591 5' -53.8 NC_002577.1 + 1907 0.67 0.960983
Target:  5'- aGggUUGGGGCccguaaggguaggGGCUGGGgucuguuACGGGCAGGg -3'
miRNA:   3'- -CaaGAUCCUG-------------UUGGCCC-------UGCCUGUCC- -5'
9591 5' -53.8 NC_002577.1 + 130458 0.67 0.958097
Target:  5'- -gUCU-GGACuuuACCGGGGCGGcuucgucccGCGGc -3'
miRNA:   3'- caAGAuCCUGu--UGGCCCUGCC---------UGUCc -5'
9591 5' -53.8 NC_002577.1 + 3155 0.67 0.958097
Target:  5'- -gUCU-GGACuuuACCGGGGCGGcuucgucccGCGGc -3'
miRNA:   3'- caAGAuCCUGu--UGGCCCUGCC---------UGUCc -5'
9591 5' -53.8 NC_002577.1 + 131707 0.67 0.953895
Target:  5'- aGggUUGGGGCccguaaggguaggGGCUGGGucuguuACGGGCAGGg -3'
miRNA:   3'- -CaaGAUCCUG-------------UUGGCCC------UGCCUGUCC- -5'
9591 5' -53.8 NC_002577.1 + 106415 0.67 0.950252
Target:  5'- -aUCgccGGGGCGuauuACCGGGaaGCGG-CAGGu -3'
miRNA:   3'- caAGa--UCCUGU----UGGCCC--UGCCuGUCC- -5'
9591 5' -53.8 NC_002577.1 + 121853 0.68 0.936748
Target:  5'- ----gAGGGCGcggACCGGGcGCGGACccGGGc -3'
miRNA:   3'- caagaUCCUGU---UGGCCC-UGCCUG--UCC- -5'
9591 5' -53.8 NC_002577.1 + 130206 0.68 0.936748
Target:  5'- cUUCUcGGGCAccgcACCGaaGGAUGGAguGGg -3'
miRNA:   3'- cAAGAuCCUGU----UGGC--CCUGCCUguCC- -5'
9591 5' -53.8 NC_002577.1 + 33086 0.68 0.936748
Target:  5'- uUUCUAuGGAgUggUCGGGGaGGGCAGGc -3'
miRNA:   3'- cAAGAU-CCU-GuuGGCCCUgCCUGUCC- -5'
9591 5' -53.8 NC_002577.1 + 11761 0.68 0.936748
Target:  5'- ----gAGGGCGcggACCGGGcGCGGACccGGGc -3'
miRNA:   3'- caagaUCCUGU---UGGCCC-UGCCUG--UCC- -5'
9591 5' -53.8 NC_002577.1 + 3408 0.68 0.936748
Target:  5'- cUUCUcGGGCAccgcACCGaaGGAUGGAguGGg -3'
miRNA:   3'- cAAGAuCCUGU----UGGC--CCUGCCUguCC- -5'
9591 5' -53.8 NC_002577.1 + 106529 0.68 0.926561
Target:  5'- -aUCUAGGACuucGCUaGGagaGACGGACAGu -3'
miRNA:   3'- caAGAUCCUGu--UGG-CC---CUGCCUGUCc -5'
9591 5' -53.8 NC_002577.1 + 60196 0.69 0.905822
Target:  5'- uGUUCUAgcGGAUAGCCcauGGGuucggcggcggccuCGGGCGGGg -3'
miRNA:   3'- -CAAGAU--CCUGUUGG---CCCu-------------GCCUGUCC- -5'
9591 5' -53.8 NC_002577.1 + 22977 0.69 0.890306
Target:  5'- -----cGGGCAAUUGGGAUauacagauGGACAGGg -3'
miRNA:   3'- caagauCCUGUUGGCCCUG--------CCUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.