miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9592 5' -48.7 NC_002577.1 + 128072 0.66 0.999188
Target:  5'- -cUCAGAUGCCAaaacAGACUGGAu-- -3'
miRNA:   3'- acAGUCUACGGUcuc-UCUGACUUuac -5'
9592 5' -48.7 NC_002577.1 + 5542 0.66 0.999188
Target:  5'- -cUCAGAUGCCAaaacAGACUGGAu-- -3'
miRNA:   3'- acAGUCUACGGUcuc-UCUGACUUuac -5'
9592 5' -48.7 NC_002577.1 + 89877 0.66 0.999188
Target:  5'- cUGUUguauGGGUGCCgGGAGuAGugUGGGAUa -3'
miRNA:   3'- -ACAG----UCUACGG-UCUC-UCugACUUUAc -5'
9592 5' -48.7 NC_002577.1 + 101375 0.66 0.999188
Target:  5'- aGUCGG-UGUCGGGGAG-CgGAGAUa -3'
miRNA:   3'- aCAGUCuACGGUCUCUCuGaCUUUAc -5'
9592 5' -48.7 NC_002577.1 + 81371 0.66 0.999001
Target:  5'- cGUaug--GCCAGAGAGAaaGGAAUGc -3'
miRNA:   3'- aCAgucuaCGGUCUCUCUgaCUUUAC- -5'
9592 5' -48.7 NC_002577.1 + 157041 0.66 0.998779
Target:  5'- gGgagCGGGUGCgAGgcgGGGGGCUGAAggGg -3'
miRNA:   3'- aCa--GUCUACGgUC---UCUCUGACUUuaC- -5'
9592 5' -48.7 NC_002577.1 + 140297 0.66 0.998779
Target:  5'- gGgagCGGGUGCgAGgcgGGGGGCUGAAggGg -3'
miRNA:   3'- aCa--GUCUACGgUC---UCUCUGACUUuaC- -5'
9592 5' -48.7 NC_002577.1 + 54782 0.67 0.996381
Target:  5'- aGUgCAGAgGCCAGGGAGGugcuaUGAAAUu -3'
miRNA:   3'- aCA-GUCUaCGGUCUCUCUg----ACUUUAc -5'
9592 5' -48.7 NC_002577.1 + 40776 0.67 0.996381
Target:  5'- --aCAcGUGCCAGGGAGACcGggGg- -3'
miRNA:   3'- acaGUcUACGGUCUCUCUGaCuuUac -5'
9592 5' -48.7 NC_002577.1 + 126697 0.69 0.989682
Target:  5'- aGUCGcGAUgGCCGGAcGGGGCcgGAAAUGc -3'
miRNA:   3'- aCAGU-CUA-CGGUCU-CUCUGa-CUUUAC- -5'
9592 5' -48.7 NC_002577.1 + 6917 0.69 0.989681
Target:  5'- aGUCGcGAUgGCCGGAcGGGGCcgGAAAUGc -3'
miRNA:   3'- aCAGU-CUA-CGGUCU-CUCUGa-CUUUAC- -5'
9592 5' -48.7 NC_002577.1 + 146737 0.69 0.986595
Target:  5'- -aUCAGAUGCguGGGAuGAaUGAAGUGu -3'
miRNA:   3'- acAGUCUACGguCUCU-CUgACUUUAC- -5'
9592 5' -48.7 NC_002577.1 + 5691 1.09 0.013694
Target:  5'- uUGUCAGAUGCCAGAGAGACUGAAAUGu -3'
miRNA:   3'- -ACAGUCUACGGUCUCUCUGACUUUAC- -5'
9592 5' -48.7 NC_002577.1 + 127922 1.09 0.013694
Target:  5'- uUGUCAGAUGCCAGAGAGACUGAAAUGu -3'
miRNA:   3'- -ACAGUCUACGGUCUCUCUGACUUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.