Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9593 | 3' | -50.5 | NC_002577.1 | + | 140507 | 0.7 | 0.938968 |
Target: 5'- gGggGGAGGGGAAccgugcggagggGGGguAugCGGAGGu -3' miRNA: 3'- -CuaCCUUCCCUU------------UCCguUugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 11045 | 0.66 | 0.993416 |
Target: 5'- cGUGGGAGGGggGcGGCGuuucuagcccccGGCgCGGGc- -3' miRNA: 3'- cUACCUUCCCuuU-CCGU------------UUG-GCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 7336 | 0.68 | 0.97083 |
Target: 5'- uAUGGggGGGGGAGGgGGGggGGggGg -3' miRNA: 3'- cUACCuuCCCUUUCCgUUUggCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 122568 | 0.66 | 0.993416 |
Target: 5'- cGUGGGAGGGggGcGGCGuuucuagcccccGGCgCGGGc- -3' miRNA: 3'- cUACCUUCCCuuU-CCGU------------UUG-GCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 139388 | 0.75 | 0.748572 |
Target: 5'- gGGUGGAAGgccGGGAAGGCAgcccgaaccccugGACCGGGc- -3' miRNA: 3'- -CUACCUUC---CCUUUCCGU-------------UUGGCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 155313 | 0.66 | 0.989954 |
Target: 5'- uGggGGggGGGggGGGUGGugguGgUGGAGAc -3' miRNA: 3'- -CuaCCuuCCCuuUCCGUU----UgGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 126032 | 0.67 | 0.985024 |
Target: 5'- gGggGGggGGGggGGGgGAuccgaaccgugcgGCgGGAAGg -3' miRNA: 3'- -CuaCCuuCCCuuUCCgUU-------------UGgCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 156613 | 0.68 | 0.97083 |
Target: 5'- gGggGGguGGGggGGGCAcGCCcgaGGGAGg -3' miRNA: 3'- -CuaCCuuCCCuuUCCGUuUGG---CCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 11615 | 0.68 | 0.967697 |
Target: 5'- uGggGGAAGGGAAGGGgGAgacgGCCGa--- -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUU----UGGCcuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 158318 | 0.72 | 0.868166 |
Target: 5'- --cGGGAGGGAGcgcgguGGCGGGCgGGggGg -3' miRNA: 3'- cuaCCUUCCCUUu-----CCGUUUGgCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6648 | 0.72 | 0.87587 |
Target: 5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3' miRNA: 3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 157046 | 0.71 | 0.904223 |
Target: 5'- --cGGAGGGGAGcgGGuGCGAGgCGGggGg -3' miRNA: 3'- cuaCCUUCCCUU--UC-CGUUUgGCCuuU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6175 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6149 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 156943 | 0.7 | 0.922204 |
Target: 5'- cGUGGAgAGGGGuuGGCGGaggugggguagacGCCGGAGg -3' miRNA: 3'- cUACCU-UCCCUuuCCGUU-------------UGGCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6123 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 11716 | 0.71 | 0.91686 |
Target: 5'- --aGGggGGaGGGAGGguAGCCGGc-- -3' miRNA: 3'- cuaCCuuCC-CUUUCCguUUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 121903 | 0.7 | 0.93331 |
Target: 5'- --cGGAgccGGGGAcggagGGGGCGAcccggacGCCGGAGAg -3' miRNA: 3'- cuaCCU---UCCCU-----UUCCGUU-------UGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 5078 | 0.69 | 0.956885 |
Target: 5'- -uUGGGAGGGcucuGGGCGAagaACCGGc-- -3' miRNA: 3'- cuACCUUCCCuu--UCCGUU---UGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 6208 | 0.69 | 0.964333 |
Target: 5'- --gGGAGGGGggGGGgAGAagaGGGGAa -3' miRNA: 3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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