Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9594 | 3' | -60.6 | NC_002577.1 | + | 160604 | 0.68 | 0.607785 |
Target: 5'- gGCCCCC-CGCACCUCgACGCcUAUUGu -3' miRNA: 3'- -UGGGGGuGUGUGGGGgUGUGuGUGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 158123 | 0.69 | 0.530163 |
Target: 5'- uGCCCCCcC-CGCCCgCCAC-CGCGCUc -3' miRNA: 3'- -UGGGGGuGuGUGGG-GGUGuGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 3937 | 0.69 | 0.539702 |
Target: 5'- uGCUCCCACcUACCCgCACAgACACg- -3' miRNA: 3'- -UGGGGGUGuGUGGGgGUGUgUGUGgc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 162184 | 0.69 | 0.582288 |
Target: 5'- cGCCUCUAUACcuguucccagaacgaAUgCCCCGCGCGCACCu -3' miRNA: 3'- -UGGGGGUGUG---------------UG-GGGGUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 135144 | 0.69 | 0.582288 |
Target: 5'- cGCCUCUAUACcuguucccagaacgaAUgCCCCGCGCGCACCu -3' miRNA: 3'- -UGGGGGUGUG---------------UG-GGGGUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 143138 | 0.69 | 0.558948 |
Target: 5'- uGCUCgCCGCACGCCCCgGuCcCACACUa -3' miRNA: 3'- -UGGG-GGUGUGUGGGGgU-GuGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 129677 | 0.69 | 0.539702 |
Target: 5'- uGCUCCCACcUACCCgCACAgACACg- -3' miRNA: 3'- -UGGGGGUGuGUGGGgGUGUgUGUGgc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 91203 | 0.69 | 0.539702 |
Target: 5'- uACCCCCgugggucgACGCuCCCCCGCAuuCGCGgCCa -3' miRNA: 3'- -UGGGGG--------UGUGuGGGGGUGU--GUGU-GGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 153596 | 0.69 | 0.530163 |
Target: 5'- uCCCCCAaacCACUCCaccaUACGCACACCu -3' miRNA: 3'- uGGGGGUgu-GUGGGG----GUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 8968 | 0.69 | 0.567673 |
Target: 5'- uUCCCCgacuuacGCACGgacuCCCCCGCcCGCGCCa -3' miRNA: 3'- uGGGGG-------UGUGU----GGGGGUGuGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 139215 | 0.69 | 0.530163 |
Target: 5'- uGCCCCCcC-CGCCCgCCAC-CGCGCUc -3' miRNA: 3'- -UGGGGGuGuGUGGG-GGUGuGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 124859 | 0.7 | 0.511276 |
Target: 5'- cUCCCCGuCGCGaaacuguauCCCCCGCACaaACACCu -3' miRNA: 3'- uGGGGGU-GUGU---------GGGGGUGUG--UGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 139118 | 0.7 | 0.501937 |
Target: 5'- gACgCCCCACgGCucuCgUCCCGCACGCGCCu -3' miRNA: 3'- -UG-GGGGUG-UGu--G-GGGGUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 72343 | 0.7 | 0.520686 |
Target: 5'- gUCCCC-CACGCCUCCA---ACACCGg -3' miRNA: 3'- uGGGGGuGUGUGGGGGUgugUGUGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 8755 | 0.7 | 0.511276 |
Target: 5'- cUCCCCGuCGCGaaacuguauCCCCCGCACaaACACCu -3' miRNA: 3'- uGGGGGU-GUGU---------GGGGGUGUG--UGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 158220 | 0.7 | 0.501937 |
Target: 5'- gACgCCCCACgGCucuCgUCCCGCACGCGCCu -3' miRNA: 3'- -UG-GGGGUG-UGu--G-GGGGUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 137420 | 0.71 | 0.45645 |
Target: 5'- gACCCCCuCGCACUCCaGCGCGCAagCGu -3' miRNA: 3'- -UGGGGGuGUGUGGGGgUGUGUGUg-GC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 157583 | 0.71 | 0.447618 |
Target: 5'- -gCUCCGCGCACCCCgACGUACGCUu -3' miRNA: 3'- ugGGGGUGUGUGGGGgUGUGUGUGGc -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 154944 | 0.71 | 0.438882 |
Target: 5'- -gCCCUACuuGCCCCUA-ACGCACCGg -3' miRNA: 3'- ugGGGGUGugUGGGGGUgUGUGUGGC- -5' |
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9594 | 3' | -60.6 | NC_002577.1 | + | 136916 | 0.71 | 0.438882 |
Target: 5'- gGCCCCC-CACcCCCCCugaagcgugcCGCgACGCCGg -3' miRNA: 3'- -UGGGGGuGUGuGGGGGu---------GUG-UGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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