Results 81 - 85 of 85 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 9594 | 3' | -60.6 | NC_002577.1 | + | 124936 | 0.78 | 0.170995 |
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Target: 5'- uCCCggCCGCGCGCacaCCCACACACACCc -3' miRNA: 3'- uGGG--GGUGUGUGg--GGGUGUGUGUGGc -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 155823 | 0.8 | 0.127128 |
|
Target: 5'- uGCCCCCcgcccaACACcaccaccaccccGCCCCUACACACACCa -3' miRNA: 3'- -UGGGGG------UGUG------------UGGGGGUGUGUGUGGc -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 141515 | 0.8 | 0.127128 |
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Target: 5'- uGCCCCCcgcccaACACcaccaccaccccGCCCCUACACACACCa -3' miRNA: 3'- -UGGGGG------UGUG------------UGGGGGUGUGUGUGGc -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 124973 | 1.07 | 0.001723 |
|
Target: 5'- cACCCCCACACACCCCCACACACACCGc -3' miRNA: 3'- -UGGGGGUGUGUGGGGGUGUGUGUGGC- -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 8640 | 1.07 | 0.001723 |
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Target: 5'- cACCCCCACACACCCCCACACACACCGc -3' miRNA: 3'- -UGGGGGUGUGUGGGGGUGUGUGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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