Results 81 - 85 of 85 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9594 | 3' | -60.6 | NC_002577.1 | + | 4837 | 0.73 | 0.345224 |
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Target: 5'- uACUCCCguGCACACCgCCgaggggggacacggcGCGCGCGCCGa -3' miRNA: 3'- -UGGGGG--UGUGUGGgGG---------------UGUGUGUGGC- -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 3937 | 0.69 | 0.539702 |
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Target: 5'- uGCUCCCACcUACCCgCACAgACACg- -3' miRNA: 3'- -UGGGGGUGuGUGGGgGUGUgUGUGgc -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 3697 | 0.67 | 0.666856 |
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Target: 5'- cGCCCCCcC-C-CCCCCACAUAggaACCu -3' miRNA: 3'- -UGGGGGuGuGuGGGGGUGUGUg--UGGc -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 2178 | 0.66 | 0.753139 |
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Target: 5'- uACCCCUACAggccuaACCCCgACAacgACACUa -3' miRNA: 3'- -UGGGGGUGUg-----UGGGGgUGUg--UGUGGc -5' |
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| 9594 | 3' | -60.6 | NC_002577.1 | + | 1369 | 0.66 | 0.743838 |
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Target: 5'- cACCCUCGCcgGCCCCgACccucaauccgcgGCACGCCc -3' miRNA: 3'- -UGGGGGUGugUGGGGgUG------------UGUGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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