miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9594 5' -52.6 NC_002577.1 + 84714 0.66 0.985193
Target:  5'- uGGCGuuuCUGcgCGUAGUuuuuGCGUAUGGGUu -3'
miRNA:   3'- -UCGCc--GACa-GCAUCA----UGCAUAUCCGc -5'
9594 5' -52.6 NC_002577.1 + 37541 0.66 0.985193
Target:  5'- uGGCGGCUG-CGUGcGUugGacUAGGg- -3'
miRNA:   3'- -UCGCCGACaGCAU-CAugCauAUCCgc -5'
9594 5' -52.6 NC_002577.1 + 103306 0.66 0.983346
Target:  5'- cAGCGag-GUCGUGGUACaUGgcGGCGa -3'
miRNA:   3'- -UCGCcgaCAGCAUCAUGcAUauCCGC- -5'
9594 5' -52.6 NC_002577.1 + 31631 0.66 0.978905
Target:  5'- uAGUGGCgcgGUaCGUgcacaugauuuugGGUGCGUAcaUAGGCc -3'
miRNA:   3'- -UCGCCGa--CA-GCA-------------UCAUGCAU--AUCCGc -5'
9594 5' -52.6 NC_002577.1 + 59282 0.66 0.976755
Target:  5'- gGGCGGCUGUagcacauauuaGUAG-ACGU---GGCGa -3'
miRNA:   3'- -UCGCCGACAg----------CAUCaUGCAuauCCGC- -5'
9594 5' -52.6 NC_002577.1 + 92165 0.67 0.973643
Target:  5'- uGCGGCUGUCGgcaucaacgcUACGaacUGGGCa -3'
miRNA:   3'- uCGCCGACAGCauc-------AUGCau-AUCCGc -5'
9594 5' -52.6 NC_002577.1 + 104545 0.68 0.95429
Target:  5'- cGGCGGCUGUUGgaacccGUGCcucgaGUcgAGGCu -3'
miRNA:   3'- -UCGCCGACAGCau----CAUG-----CAuaUCCGc -5'
9594 5' -52.6 NC_002577.1 + 99586 0.69 0.92974
Target:  5'- uAGCGGCUGUUGUGGgacuagcuuugauuUugGgaAUGGGUa -3'
miRNA:   3'- -UCGCCGACAGCAUC--------------AugCa-UAUCCGc -5'
9594 5' -52.6 NC_002577.1 + 141730 0.71 0.851448
Target:  5'- cGUGGCUGUgGU-GUGUGUAgGGGCGg -3'
miRNA:   3'- uCGCCGACAgCAuCAUGCAUaUCCGC- -5'
9594 5' -52.6 NC_002577.1 + 155608 0.71 0.851448
Target:  5'- cGUGGCUGUgGU-GUGUGUAgGGGCGg -3'
miRNA:   3'- uCGCCGACAgCAuCAUGCAUaUCCGC- -5'
9594 5' -52.6 NC_002577.1 + 9247 0.74 0.681945
Target:  5'- gAGCGGuCUcGUCGUAGUGCGUAUGaacGUGu -3'
miRNA:   3'- -UCGCC-GA-CAGCAUCAUGCAUAUc--CGC- -5'
9594 5' -52.6 NC_002577.1 + 124367 0.74 0.681945
Target:  5'- gAGCGGuCUcGUCGUAGUGCGUAUGaacGUGu -3'
miRNA:   3'- -UCGCC-GA-CAGCAUCAUGCAUAUc--CGC- -5'
9594 5' -52.6 NC_002577.1 + 103139 0.78 0.497512
Target:  5'- gAGCGGCgUGcagaUCGUGGUGacgcgcCGUAUGGGCGg -3'
miRNA:   3'- -UCGCCG-AC----AGCAUCAU------GCAUAUCCGC- -5'
9594 5' -52.6 NC_002577.1 + 8605 1.03 0.016729
Target:  5'- gAGCGGCUGUCGUAGUACGUAUAGcGCGa -3'
miRNA:   3'- -UCGCCGACAGCAUCAUGCAUAUC-CGC- -5'
9594 5' -52.6 NC_002577.1 + 125008 1.09 0.00699
Target:  5'- gAGCGGCUGUCGUAGUACGUAUAGGCGc -3'
miRNA:   3'- -UCGCCGACAGCAUCAUGCAUAUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.