miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9595 3' -48.5 NC_002577.1 + 138942 0.68 0.997839
Target:  5'- gCCGUgGGGcgucccGCCGggUUCCGgAUUUc- -3'
miRNA:   3'- -GGCAgCCU------UGGCuuAAGGUgUAAGcu -5'
9595 3' -48.5 NC_002577.1 + 8597 0.69 0.996423
Target:  5'- -gGUCGGAACucgCGAcUUCCACggUCGc -3'
miRNA:   3'- ggCAGCCUUG---GCUuAAGGUGuaAGCu -5'
9595 3' -48.5 NC_002577.1 + 8505 0.69 0.99511
Target:  5'- gCgGcCGGGACgGGAUUCCugAUUCc- -3'
miRNA:   3'- -GgCaGCCUUGgCUUAAGGugUAAGcu -5'
9595 3' -48.5 NC_002577.1 + 56479 0.69 0.995035
Target:  5'- aCCGUCGGAGCCG--UUCUggcacuaACGgaCGAc -3'
miRNA:   3'- -GGCAGCCUUGGCuuAAGG-------UGUaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 27267 0.73 0.954612
Target:  5'- aCGUCGGAACCGGAg-CCGCGg---- -3'
miRNA:   3'- gGCAGCCUUGGCUUaaGGUGUaagcu -5'
9595 3' -48.5 NC_002577.1 + 160346 0.79 0.730965
Target:  5'- gCCGUCGaGAACCcGcgUCCGCGUUUGGg -3'
miRNA:   3'- -GGCAGC-CUUGGcUuaAGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 124880 1.13 0.012772
Target:  5'- cCCGUCGGAACCGAAUUCCACAUUCGAg -3'
miRNA:   3'- -GGCAGCCUUGGCUUAAGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 118481 0.66 0.999716
Target:  5'- cCUGUaUGGAACCG--UUCCGaGUUCGGg -3'
miRNA:   3'- -GGCA-GCCUUGGCuuAAGGUgUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 162708 0.66 0.999709
Target:  5'- gCCGUCGGGAUccugcaaCGAGcUCCGCuccgUGAa -3'
miRNA:   3'- -GGCAGCCUUG-------GCUUaAGGUGuaa-GCU- -5'
9595 3' -48.5 NC_002577.1 + 132846 0.66 0.999617
Target:  5'- aCGcUCGGGGCCGggUacaaguugcccgggUCCGCGggUCuGAa -3'
miRNA:   3'- gGC-AGCCUUGGCuuA--------------AGGUGUa-AG-CU- -5'
9595 3' -48.5 NC_002577.1 + 128027 0.68 0.998493
Target:  5'- gCCGcUCGGAccGCUGcGAUUCCAUccUUCGAc -3'
miRNA:   3'- -GGC-AGCCU--UGGC-UUAAGGUGu-AAGCU- -5'
9595 3' -48.5 NC_002577.1 + 10546 0.66 0.999824
Target:  5'- -aGUCGGGgggcgacccgcgACCGuGUUCCGCGagCGGc -3'
miRNA:   3'- ggCAGCCU------------UGGCuUAAGGUGUaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 11377 0.67 0.999158
Target:  5'- cCCGUCGGGAgcgaucCCGGAUcggacgCCGCgg-CGAa -3'
miRNA:   3'- -GGCAGCCUU------GGCUUAa-----GGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 27815 0.66 0.999642
Target:  5'- gCGUCGGuuACUGAAU-CCGgAUUCa- -3'
miRNA:   3'- gGCAGCCu-UGGCUUAaGGUgUAAGcu -5'
9595 3' -48.5 NC_002577.1 + 21337 0.69 0.996423
Target:  5'- cCUGUUGGcugCGAAUUUCACAUUUGGc -3'
miRNA:   3'- -GGCAGCCuugGCUUAAGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 122846 0.67 0.999314
Target:  5'- gCGUCGGcgacgcGGCCGAAcgCCGCucgCGGa -3'
miRNA:   3'- gGCAGCC------UUGGCUUaaGGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 42871 0.68 0.998752
Target:  5'- gCCGUCGGuACCGAAaauaaaCCGCcagCGGu -3'
miRNA:   3'- -GGCAGCCuUGGCUUaa----GGUGuaaGCU- -5'
9595 3' -48.5 NC_002577.1 + 8733 1.13 0.012772
Target:  5'- cCCGUCGGAACCGAAUUCCACAUUCGAg -3'
miRNA:   3'- -GGCAGCCUUGGCUUAAGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 136992 0.79 0.730965
Target:  5'- gCCGUCGaGAACCcGcgUCCGCGUUUGGg -3'
miRNA:   3'- -GGCAGC-CUUGGcUuaAGGUGUAAGCU- -5'
9595 3' -48.5 NC_002577.1 + 125109 0.69 0.99511
Target:  5'- gCgGcCGGGACgGGAUUCCugAUUCc- -3'
miRNA:   3'- -GgCaGCCUUGgCUUAAGGugUAAGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.