Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9595 | 5' | -55.3 | NC_002577.1 | + | 1040 | 0.67 | 0.908477 |
Target: 5'- cGCGGGGggcuggCGGaGAccgCCUcuGUCCCGGCg -3' miRNA: 3'- aUGCCUUa-----GUC-CUua-GGG--CAGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 1563 | 0.67 | 0.902297 |
Target: 5'- cGCGGAuugaggGUCGGGGccggcgaggGUgUCGUUCCGGUg -3' miRNA: 3'- aUGCCU------UAGUCCU---------UAgGGCAGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 2679 | 0.66 | 0.949435 |
Target: 5'- cACGGGacgcguauucGUCGGGAccgCCUuUCuCCGGCa -3' miRNA: 3'- aUGCCU----------UAGUCCUua-GGGcAG-GGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 7271 | 0.68 | 0.867257 |
Target: 5'- cACGGAAgCuGGAAcCCCaucggacGUCUCGGCg -3' miRNA: 3'- aUGCCUUaGuCCUUaGGG-------CAGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 8697 | 1.09 | 0.003856 |
Target: 5'- cUACGGAAUCAGGAAUCCCGUCCCGGCc -3' miRNA: 3'- -AUGCCUUAGUCCUUAGGGCAGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 9632 | 0.69 | 0.80257 |
Target: 5'- cACGGGAUUccGGAUCCCGaUCCCauaGCg -3' miRNA: 3'- aUGCCUUAGucCUUAGGGC-AGGGc--CG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 9822 | 0.73 | 0.586012 |
Target: 5'- cUAUGGGAUCGGG-AUCCgGaaUCCCGuGCa -3' miRNA: 3'- -AUGCCUUAGUCCuUAGGgC--AGGGC-CG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 10602 | 0.66 | 0.935845 |
Target: 5'- cGCGGggUCGG--AUCUCGUUCuCGuGCg -3' miRNA: 3'- aUGCCuuAGUCcuUAGGGCAGG-GC-CG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 11368 | 0.66 | 0.940609 |
Target: 5'- aACGaGAgccccGUCGGGAgcgAUCCCGgaucggacgCCgCGGCg -3' miRNA: 3'- aUGC-CU-----UAGUCCU---UAGGGCa--------GG-GCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 11834 | 0.66 | 0.930332 |
Target: 5'- cGCGGAucagcgGUCGGGucgcGAUCgCGUCCgucggauCGGCg -3' miRNA: 3'- aUGCCU------UAGUCC----UUAGgGCAGG-------GCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 34254 | 0.66 | 0.940609 |
Target: 5'- -cCGGGuuucCGGGGauggcaaaGUCCCGcguaaaauucaUCCCGGCg -3' miRNA: 3'- auGCCUua--GUCCU--------UAGGGC-----------AGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 40850 | 0.68 | 0.860488 |
Target: 5'- gUACGGAAUCAGGAuAUCCUcUCgCGa- -3' miRNA: 3'- -AUGCCUUAGUCCU-UAGGGcAGgGCcg -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 42570 | 0.67 | 0.914423 |
Target: 5'- uUugGGAAUgGGGAccAUUCCuucaggCCUGGCa -3' miRNA: 3'- -AugCCUUAgUCCU--UAGGGca----GGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 61993 | 0.68 | 0.885155 |
Target: 5'- -uCGGAGuuacuaaaaucguccUCGGGcgcgccGUCgCCGUCCUGGCa -3' miRNA: 3'- auGCCUU---------------AGUCCu-----UAG-GGCAGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 74399 | 0.71 | 0.727423 |
Target: 5'- cGCGGAGUCuuuuuccGGUCgCGUUCCGGCa -3' miRNA: 3'- aUGCCUUAGucc----UUAGgGCAGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 78392 | 0.66 | 0.935845 |
Target: 5'- gGCGGAG-CGuGGGA-CCCGUCa-GGCg -3' miRNA: 3'- aUGCCUUaGU-CCUUaGGGCAGggCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 89569 | 0.66 | 0.94817 |
Target: 5'- aUGCGGGAacguauaccgacgaUCuuGGAuuguuggucuGUUCUGUCCUGGCg -3' miRNA: 3'- -AUGCCUU--------------AGu-CCU----------UAGGGCAGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 107575 | 0.66 | 0.945138 |
Target: 5'- gACGGGG--GGGAGaUCCGgUCCGGCg -3' miRNA: 3'- aUGCCUUagUCCUUaGGGCaGGGCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 121779 | 0.66 | 0.930332 |
Target: 5'- cGCGGAucagcgGUCGGGucgcGAUCgCGUCCgucggauCGGCg -3' miRNA: 3'- aUGCCU------UAGUCC----UUAGgGCAGG-------GCCG- -5' |
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9595 | 5' | -55.3 | NC_002577.1 | + | 122246 | 0.66 | 0.940609 |
Target: 5'- aACGaGAgccccGUCGGGAgcgAUCCCGgaucggacgCCgCGGCg -3' miRNA: 3'- aUGC-CU-----UAGUCCU---UAGGGCa--------GG-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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