miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9595 5' -55.3 NC_002577.1 + 1563 0.67 0.902297
Target:  5'- cGCGGAuugaggGUCGGGGccggcgaggGUgUCGUUCCGGUg -3'
miRNA:   3'- aUGCCU------UAGUCCU---------UAgGGCAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 61993 0.68 0.885155
Target:  5'- -uCGGAGuuacuaaaaucguccUCGGGcgcgccGUCgCCGUCCUGGCa -3'
miRNA:   3'- auGCCUU---------------AGUCCu-----UAG-GGCAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 139147 0.68 0.867998
Target:  5'- cUGCGGAAc--GGAAaUCCGgaaCCCGGCg -3'
miRNA:   3'- -AUGCCUUaguCCUUaGGGCa--GGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 158191 0.68 0.867998
Target:  5'- cUGCGGAAc--GGAAaUCCGgaaCCCGGCg -3'
miRNA:   3'- -AUGCCUUaguCCUUaGGGCa--GGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 7271 0.68 0.867257
Target:  5'- cACGGAAgCuGGAAcCCCaucggacGUCUCGGCg -3'
miRNA:   3'- aUGCCUUaGuCCUUaGGG-------CAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 126343 0.68 0.867257
Target:  5'- cACGGAAgCuGGAAcCCCaucggacGUCUCGGCg -3'
miRNA:   3'- aUGCCUUaGuCCUUaGGG-------CAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 40850 0.68 0.860488
Target:  5'- gUACGGAAUCAGGAuAUCCUcUCgCGa- -3'
miRNA:   3'- -AUGCCUUAGUCCU-UAGGGcAGgGCcg -5'
9595 5' -55.3 NC_002577.1 + 139315 0.68 0.852774
Target:  5'- gGCGGcguuccguuccAGUCcucguccaaGGGAGUaCCCGcgCCCGGCg -3'
miRNA:   3'- aUGCC-----------UUAG---------UCCUUA-GGGCa-GGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 158023 0.68 0.852774
Target:  5'- gGCGGcguuccguuccAGUCcucguccaaGGGAGUaCCCGcgCCCGGCg -3'
miRNA:   3'- aUGCC-----------UUAG---------UCCUUA-GGGCa-GGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 9632 0.69 0.80257
Target:  5'- cACGGGAUUccGGAUCCCGaUCCCauaGCg -3'
miRNA:   3'- aUGCCUUAGucCUUAGGGC-AGGGc--CG- -5'
9595 5' -55.3 NC_002577.1 + 123982 0.69 0.80257
Target:  5'- cACGGGAUUccGGAUCCCGaUCCCauaGCg -3'
miRNA:   3'- aUGCCUUAGucCUUAGGGC-AGGGc--CG- -5'
9595 5' -55.3 NC_002577.1 + 74399 0.71 0.727423
Target:  5'- cGCGGAGUCuuuuuccGGUCgCGUUCCGGCa -3'
miRNA:   3'- aUGCCUUAGucc----UUAGgGCAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 137330 0.71 0.717567
Target:  5'- gGCGGGucgaGGGAAgggCCCGUCCUcGCa -3'
miRNA:   3'- aUGCCUuag-UCCUUa--GGGCAGGGcCG- -5'
9595 5' -55.3 NC_002577.1 + 160008 0.71 0.717567
Target:  5'- gGCGGGucgaGGGAAgggCCCGUCCUcGCa -3'
miRNA:   3'- aUGCCUuag-UCCUUa--GGGCAGGGcCG- -5'
9595 5' -55.3 NC_002577.1 + 9822 0.73 0.586012
Target:  5'- cUAUGGGAUCGGG-AUCCgGaaUCCCGuGCa -3'
miRNA:   3'- -AUGCCUUAGUCCuUAGGgC--AGGGC-CG- -5'
9595 5' -55.3 NC_002577.1 + 123791 0.73 0.586012
Target:  5'- cUAUGGGAUCGGG-AUCCgGaaUCCCGuGCa -3'
miRNA:   3'- -AUGCCUUAGUCCuUAGGgC--AGGGC-CG- -5'
9595 5' -55.3 NC_002577.1 + 124916 1.09 0.003856
Target:  5'- cUACGGAAUCAGGAAUCCCGUCCCGGCc -3'
miRNA:   3'- -AUGCCUUAGUCCUUAGGGCAGGGCCG- -5'
9595 5' -55.3 NC_002577.1 + 8697 1.09 0.003856
Target:  5'- cUACGGAAUCAGGAAUCCCGUCCCGGCc -3'
miRNA:   3'- -AUGCCUUAGUCCUUAGGGCAGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.