miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9596 3' -66.5 NC_002577.1 + 125137 0.66 0.523932
Target:  5'- gUGUGUgGGGGUgUGUGuggguGUGCGCGCGg -3'
miRNA:   3'- gGCGCGgCUCCGgGCGC-----CACGCGCGC- -5'
9596 3' -66.5 NC_002577.1 + 8477 0.66 0.523931
Target:  5'- gUGUGUgGGGGUgUGUGuggguGUGCGCGCGg -3'
miRNA:   3'- gGCGCGgCUCCGgGCGC-----CACGCGCGC- -5'
9596 3' -66.5 NC_002577.1 + 108176 0.66 0.514946
Target:  5'- aCGCGUCgGGGGCuCCGUGGcGCaUGCa -3'
miRNA:   3'- gGCGCGG-CUCCG-GGCGCCaCGcGCGc -5'
9596 3' -66.5 NC_002577.1 + 141738 0.66 0.506024
Target:  5'- gCCGgaGCCGuGG-CUGUGGUGUGUGUa -3'
miRNA:   3'- -GGCg-CGGCuCCgGGCGCCACGCGCGc -5'
9596 3' -66.5 NC_002577.1 + 155600 0.66 0.506024
Target:  5'- gCCGgaGCCGuGG-CUGUGGUGUGUGUa -3'
miRNA:   3'- -GGCg-CGGCuCCgGGCGCCACGCGCGc -5'
9596 3' -66.5 NC_002577.1 + 139933 0.66 0.497169
Target:  5'- aCCcCGgUGAGGUCCGCagagGGcUGCcGCGCGg -3'
miRNA:   3'- -GGcGCgGCUCCGGGCG----CC-ACG-CGCGC- -5'
9596 3' -66.5 NC_002577.1 + 158839 0.66 0.497169
Target:  5'- gCGCuGCCaGAGG-CCGCGGccGCGgcCGCGg -3'
miRNA:   3'- gGCG-CGG-CUCCgGGCGCCa-CGC--GCGC- -5'
9596 3' -66.5 NC_002577.1 + 157404 0.66 0.497169
Target:  5'- aCCcCGgUGAGGUCCGCagagGGcUGCcGCGCGg -3'
miRNA:   3'- -GGcGCgGCUCCGGGCG----CC-ACG-CGCGC- -5'
9596 3' -66.5 NC_002577.1 + 138498 0.66 0.497169
Target:  5'- gCGCuGCCaGAGG-CCGCGGccGCGgcCGCGg -3'
miRNA:   3'- gGCG-CGG-CUCCgGGCGCCa-CGC--GCGC- -5'
9596 3' -66.5 NC_002577.1 + 121779 0.66 0.497169
Target:  5'- gCGCGCCugcuccGGCgCGCcGaGCGCGCGg -3'
miRNA:   3'- gGCGCGGcu----CCGgGCGcCaCGCGCGC- -5'
9596 3' -66.5 NC_002577.1 + 125308 0.66 0.488384
Target:  5'- uUCGCGCCGcugcggcguuuAGGCgCGCaGcgGCGCGUu -3'
miRNA:   3'- -GGCGCGGC-----------UCCGgGCGcCa-CGCGCGc -5'
9596 3' -66.5 NC_002577.1 + 136929 0.66 0.488384
Target:  5'- gCgGgGCCGGGGUcguaacaaggcuCCGCGGaGCGCGa- -3'
miRNA:   3'- -GgCgCGGCUCCG------------GGCGCCaCGCGCgc -5'
9596 3' -66.5 NC_002577.1 + 160408 0.66 0.488384
Target:  5'- gCgGgGCCGGGGUcguaacaaggcuCCGCGGaGCGCGa- -3'
miRNA:   3'- -GgCgCGGCUCCG------------GGCGCCaCGCGCgc -5'
9596 3' -66.5 NC_002577.1 + 8306 0.66 0.488384
Target:  5'- uUCGCGCCGcugcggcguuuAGGCgCGCaGcgGCGCGUu -3'
miRNA:   3'- -GGCGCGGC-----------UCCGgGCGcCa-CGCGCGc -5'
9596 3' -66.5 NC_002577.1 + 163163 0.66 0.479673
Target:  5'- gCGCGCgGcGGaCCCuaGCGaGcaUGCGCGCGg -3'
miRNA:   3'- gGCGCGgCuCC-GGG--CGC-C--ACGCGCGC- -5'
9596 3' -66.5 NC_002577.1 + 38357 0.66 0.479673
Target:  5'- gCCgGCGCCGAguucaauuGGCCUcUGGcGCGgGCGg -3'
miRNA:   3'- -GG-CGCGGCU--------CCGGGcGCCaCGCgCGC- -5'
9596 3' -66.5 NC_002577.1 + 134165 0.66 0.479673
Target:  5'- gCGCGCgGcGGaCCCuaGCGaGcaUGCGCGCGg -3'
miRNA:   3'- gGCGCGgCuCC-GGG--CGC-C--ACGCGCGC- -5'
9596 3' -66.5 NC_002577.1 + 18792 0.66 0.477075
Target:  5'- cCCGCGCCGuGGacggaacuacgcauCCgGUGGUGCcCGUc -3'
miRNA:   3'- -GGCGCGGCuCC--------------GGgCGCCACGcGCGc -5'
9596 3' -66.5 NC_002577.1 + 121651 0.66 0.471039
Target:  5'- cCCGgGUCGucGCCCG-GGUcCGCGCc -3'
miRNA:   3'- -GGCgCGGCucCGGGCgCCAcGCGCGc -5'
9596 3' -66.5 NC_002577.1 + 11963 0.66 0.471039
Target:  5'- cCCGgGUCGucGCCCG-GGUcCGCGCc -3'
miRNA:   3'- -GGCgCGGCucCGGGCgCCAcGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.