miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9596 5' -53.4 NC_002577.1 + 1504 0.66 0.974243
Target:  5'- uGUGCGCGCAUg------CGCUCGCGc -3'
miRNA:   3'- cCGUGCGCGUAguauucaGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 4786 0.69 0.903296
Target:  5'- cGGCGCG-GCGUCGUcgcgCGC-CGCGg -3'
miRNA:   3'- -CCGUGCgCGUAGUAuucaGCGaGCGC- -5'
9596 5' -53.4 NC_002577.1 + 7702 0.7 0.87609
Target:  5'- cGGCcCGCGgAUUcgGAucgCGCUCGCGa -3'
miRNA:   3'- -CCGuGCGCgUAGuaUUca-GCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 7964 0.68 0.941739
Target:  5'- gGGCGCGgGCAgg--GAGUUaaCUCGCGa -3'
miRNA:   3'- -CCGUGCgCGUaguaUUCAGc-GAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 8990 1.12 0.003684
Target:  5'- gGGCACGCGCAUCAUAAGUCGCUCGCGg -3'
miRNA:   3'- -CCGUGCGCGUAGUAUUCAGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 9168 0.66 0.976789
Target:  5'- uGGCGCGgGCGggg-GAGUCcgUCGCGu -3'
miRNA:   3'- -CCGUGCgCGUaguaUUCAGcgAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 11839 0.8 0.376452
Target:  5'- gGGCGCGCGgAUCAgcggucGGGUCGCgaUCGCGu -3'
miRNA:   3'- -CCGUGCGCgUAGUa-----UUCAGCG--AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 16690 0.7 0.87609
Target:  5'- -aCGCGCGguUCAguAGUCGCgcugCGCa -3'
miRNA:   3'- ccGUGCGCguAGUauUCAGCGa---GCGc -5'
9596 5' -53.4 NC_002577.1 + 16950 0.69 0.903296
Target:  5'- uGCAUGacuauCGCAgUCGUGAGaCGCUCGCu -3'
miRNA:   3'- cCGUGC-----GCGU-AGUAUUCaGCGAGCGc -5'
9596 5' -53.4 NC_002577.1 + 18544 0.68 0.931967
Target:  5'- cGCGCGCGCAcUCAgucucGUCGCgaaUCGgGa -3'
miRNA:   3'- cCGUGCGCGU-AGUauu--CAGCG---AGCgC- -5'
9596 5' -53.4 NC_002577.1 + 19305 0.68 0.936974
Target:  5'- gGGUcgACGCGUGUCu---GUcCGCUCGCu -3'
miRNA:   3'- -CCG--UGCGCGUAGuauuCA-GCGAGCGc -5'
9596 5' -53.4 NC_002577.1 + 20829 0.67 0.950552
Target:  5'- aGCAUGCGCGgaggaAUGcuaUCGCUCGCu -3'
miRNA:   3'- cCGUGCGCGUag---UAUuc-AGCGAGCGc -5'
9596 5' -53.4 NC_002577.1 + 21186 0.67 0.964073
Target:  5'- cGGCAaccuccggauagaGCGgAgCAgaggGAGUCGUUCGCGa -3'
miRNA:   3'- -CCGUg------------CGCgUaGUa---UUCAGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 28379 0.66 0.976789
Target:  5'- uGGUACGCGCua-GUGAaaucUCGCUuggaCGCGg -3'
miRNA:   3'- -CCGUGCGCGuagUAUUc---AGCGA----GCGC- -5'
9596 5' -53.4 NC_002577.1 + 30524 0.67 0.958427
Target:  5'- aGGCGCGCGCAcUAcAAGUacauugcgCGCUCuCGa -3'
miRNA:   3'- -CCGUGCGCGUaGUaUUCA--------GCGAGcGC- -5'
9596 5' -53.4 NC_002577.1 + 31950 0.67 0.948008
Target:  5'- aGCACGCugugacagGCAgugCGUAAGUUGCcggcuccuacgcccaUCGCGa -3'
miRNA:   3'- cCGUGCG--------CGUa--GUAUUCAGCG---------------AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 33521 0.67 0.958427
Target:  5'- cGGaACGCGUAaCG--AGcCGCUCGCGa -3'
miRNA:   3'- -CCgUGCGCGUaGUauUCaGCGAGCGC- -5'
9596 5' -53.4 NC_002577.1 + 36437 0.7 0.861141
Target:  5'- uGGCgACGCGUGUCA-GAGUCGg-CGCa -3'
miRNA:   3'- -CCG-UGCGCGUAGUaUUCAGCgaGCGc -5'
9596 5' -53.4 NC_002577.1 + 36483 0.66 0.9715
Target:  5'- uGCGcCGCGCAUUGUGcaucGUCGUacUCGUGa -3'
miRNA:   3'- cCGU-GCGCGUAGUAUu---CAGCG--AGCGC- -5'
9596 5' -53.4 NC_002577.1 + 45140 0.7 0.883235
Target:  5'- uGGCcgaGCGCAUCucuaAAGUCGCUacUGCa -3'
miRNA:   3'- -CCGug-CGCGUAGua--UUCAGCGA--GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.