Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9596 | 5' | -53.4 | NC_002577.1 | + | 19305 | 0.68 | 0.936974 |
Target: 5'- gGGUcgACGCGUGUCu---GUcCGCUCGCu -3' miRNA: 3'- -CCG--UGCGCGUAGuauuCA-GCGAGCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 125650 | 0.68 | 0.936974 |
Target: 5'- gGGCGCGgGCAgg--GAGUUaacCUCGCGa -3' miRNA: 3'- -CCGUGCgCGUaguaUUCAGc--GAGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 18544 | 0.68 | 0.931967 |
Target: 5'- cGCGCGCGCAcUCAgucucGUCGCgaaUCGgGa -3' miRNA: 3'- cCGUGCGCGU-AGUauu--CAGCG---AGCgC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 163303 | 0.68 | 0.921224 |
Target: 5'- cGCAUGCGCG-CAcGGGUCcGCUaCGCa -3' miRNA: 3'- cCGUGCGCGUaGUaUUCAG-CGA-GCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 59401 | 0.68 | 0.921224 |
Target: 5'- cGCuACGCGUcUCccUAAGguagCGCUCGCGa -3' miRNA: 3'- cCG-UGCGCGuAGu-AUUCa---GCGAGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 134024 | 0.68 | 0.921224 |
Target: 5'- cGCAUGCGCG-CAcGGGUCcGCUaCGCa -3' miRNA: 3'- cCGUGCGCGUaGUaUUCAG-CGA-GCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 76337 | 0.69 | 0.917812 |
Target: 5'- cGGCugGCGaCGcUCGUuguaacaagggagacGAGUCGCggCGCa -3' miRNA: 3'- -CCGugCGC-GU-AGUA---------------UUCAGCGa-GCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 85182 | 0.69 | 0.909512 |
Target: 5'- cGGcCugGCGUAUCGU---UCGUUCGUGc -3' miRNA: 3'- -CC-GugCGCGUAGUAuucAGCGAGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 4786 | 0.69 | 0.903296 |
Target: 5'- cGGCGCG-GCGUCGUcgcgCGC-CGCGg -3' miRNA: 3'- -CCGUGCgCGUAGUAuucaGCGaGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 16950 | 0.69 | 0.903296 |
Target: 5'- uGCAUGacuauCGCAgUCGUGAGaCGCUCGCu -3' miRNA: 3'- cCGUGC-----GCGU-AGUAUUCaGCGAGCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 128827 | 0.69 | 0.903296 |
Target: 5'- cGGCGCG-GCGUCGUcgcgCGC-CGCGg -3' miRNA: 3'- -CCGUGCgCGUAGUAuucaGCGaGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 45140 | 0.7 | 0.883235 |
Target: 5'- uGGCcgaGCGCAUCucuaAAGUCGCUacUGCa -3' miRNA: 3'- -CCGug-CGCGUAGua--UUCAGCGA--GCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 125912 | 0.7 | 0.87609 |
Target: 5'- cGGCcCGCGgAUUcgGAucgCGCUCGCGa -3' miRNA: 3'- -CCGuGCGCgUAGuaUUca-GCGAGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 16690 | 0.7 | 0.87609 |
Target: 5'- -aCGCGCGguUCAguAGUCGCgcugCGCa -3' miRNA: 3'- ccGUGCGCguAGUauUCAGCGa---GCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 7702 | 0.7 | 0.87609 |
Target: 5'- cGGCcCGCGgAUUcgGAucgCGCUCGCGa -3' miRNA: 3'- -CCGuGCGCgUAGuaUUca-GCGAGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 160691 | 0.7 | 0.875363 |
Target: 5'- cGUugGCGCGuucUCcgGAGgccauggcggagaUCGCUCGCGu -3' miRNA: 3'- cCGugCGCGU---AGuaUUC-------------AGCGAGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 136646 | 0.7 | 0.875363 |
Target: 5'- cGUugGCGCGuucUCcgGAGgccauggcggagaUCGCUCGCGu -3' miRNA: 3'- cCGugCGCGU---AGuaUUC-------------AGCGAGCGC- -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 46608 | 0.7 | 0.868723 |
Target: 5'- gGGCcccucGCGCGCaAUCAUGGGUUGCUguauuucaaauUGCa -3' miRNA: 3'- -CCG-----UGCGCG-UAGUAUUCAGCGA-----------GCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 36437 | 0.7 | 0.861141 |
Target: 5'- uGGCgACGCGUGUCA-GAGUCGg-CGCa -3' miRNA: 3'- -CCG-UGCGCGUAGUaUUCAGCgaGCGc -5' |
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9596 | 5' | -53.4 | NC_002577.1 | + | 71149 | 0.77 | 0.512932 |
Target: 5'- cGGCGCGCGCAacUCGc--GUCGCguaggCGCGa -3' miRNA: 3'- -CCGUGCGCGU--AGUauuCAGCGa----GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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