miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9597 3' -54.1 NC_002577.1 + 123843 0.71 0.772587
Target:  5'- uGUGUGUGCAACaaaGCGAgaCCCUCUaCCc -3'
miRNA:   3'- -UAUAUACGUUGgggCGCU--GGGAGA-GG- -5'
9597 3' -54.1 NC_002577.1 + 124348 0.69 0.874701
Target:  5'- ----cUGCGuuuCCCCGCacGGCCCUCgaaaCCa -3'
miRNA:   3'- uauauACGUu--GGGGCG--CUGGGAGa---GG- -5'
9597 3' -54.1 NC_002577.1 + 128827 0.66 0.950028
Target:  5'- -----aGCGACCaCCGCGugcuACCCUCg-- -3'
miRNA:   3'- uauauaCGUUGG-GGCGC----UGGGAGagg -5'
9597 3' -54.1 NC_002577.1 + 131848 0.68 0.899629
Target:  5'- -gGUAgGCGcgaagguuggGCCCguuagggcuaggaGCGACCCUCUCCc -3'
miRNA:   3'- uaUAUaCGU----------UGGGg------------CGCUGGGAGAGG- -5'
9597 3' -54.1 NC_002577.1 + 134687 0.67 0.920349
Target:  5'- ---gGUGCGGCCCCGUccGACUUUgccgugggaggCUCCa -3'
miRNA:   3'- uauaUACGUUGGGGCG--CUGGGA-----------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 135247 0.68 0.88892
Target:  5'- -----aGCGgaACCCCGCGGCUCgguugcgUUCCg -3'
miRNA:   3'- uauauaCGU--UGGGGCGCUGGGa------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 135839 0.67 0.931219
Target:  5'- -----cGCAGCCuCCuCGGCCCUUguggCCg -3'
miRNA:   3'- uauauaCGUUGG-GGcGCUGGGAGa---GG- -5'
9597 3' -54.1 NC_002577.1 + 136086 0.69 0.866498
Target:  5'- ---gGUGCAccgucucGCCCCGCaGCCaaugCUCCg -3'
miRNA:   3'- uauaUACGU-------UGGGGCGcUGGga--GAGG- -5'
9597 3' -54.1 NC_002577.1 + 139688 0.68 0.898323
Target:  5'- -----cGCAACCCUGCGAuucuaagacgcuuucCCCgUCUCg -3'
miRNA:   3'- uauauaCGUUGGGGCGCU---------------GGG-AGAGg -5'
9597 3' -54.1 NC_002577.1 + 141105 0.72 0.723711
Target:  5'- -----gGCGGCCCCGCGGUCCUgUUCu -3'
miRNA:   3'- uauauaCGUUGGGGCGCUGGGAgAGG- -5'
9597 3' -54.1 NC_002577.1 + 141363 0.66 0.957999
Target:  5'- -----gGCAGCaCUgGCGAUCCgCUCCu -3'
miRNA:   3'- uauauaCGUUG-GGgCGCUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 148818 0.79 0.364493
Target:  5'- -aAUAUGCAAUCCCacuGCGGCCUccuuUCUCCa -3'
miRNA:   3'- uaUAUACGUUGGGG---CGCUGGG----AGAGG- -5'
9597 3' -54.1 NC_002577.1 + 153861 0.66 0.95413
Target:  5'- cUGUAUGCGccgACCCaaaGCcGCCUcCUCCu -3'
miRNA:   3'- uAUAUACGU---UGGGg--CGcUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 155975 0.66 0.957999
Target:  5'- -----gGCAGCaCUgGCGAUCCgCUCCu -3'
miRNA:   3'- uauauaCGUUG-GGgCGCUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 156233 0.72 0.723711
Target:  5'- -----gGCGGCCCCGCGGUCCUgUUCu -3'
miRNA:   3'- uauauaCGUUGGGGCGCUGGGAgAGG- -5'
9597 3' -54.1 NC_002577.1 + 157650 0.68 0.914546
Target:  5'- -----cGCAACCCUGCGAUUCUaagacgcuUUCCc -3'
miRNA:   3'- uauauaCGUUGGGGCGCUGGGA--------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 161252 0.69 0.866498
Target:  5'- ---gGUGCAccgucucGCCCCGCaGCCaaugCUCCg -3'
miRNA:   3'- uauaUACGU-------UGGGGCGcUGGga--GAGG- -5'
9597 3' -54.1 NC_002577.1 + 161499 0.67 0.931219
Target:  5'- -----cGCAGCCuCCuCGGCCCUUguggCCg -3'
miRNA:   3'- uauauaCGUUGG-GGcGCUGGGAGa---GG- -5'
9597 3' -54.1 NC_002577.1 + 162083 0.68 0.88892
Target:  5'- -----cGgAACCCCGCGGCUCgguugcgUUCCg -3'
miRNA:   3'- uauauaCgUUGGGGCGCUGGGa------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 162641 0.67 0.920349
Target:  5'- ---gGUGCGGCCCCGUccGACUUUgccgugggaggCUCCa -3'
miRNA:   3'- uauaUACGUUGGGGCG--CUGGGA-----------GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.