miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9598 3' -53.8 NC_002577.1 + 154278 0.66 0.955491
Target:  5'- uGCgaUGUGGCUUcGCCGCAAAGuccuuucccauacuAGGCg -3'
miRNA:   3'- uCGa-ACGCCGGA-CGGCGUUUU--------------UCUGa -5'
9598 3' -53.8 NC_002577.1 + 157772 0.66 0.952657
Target:  5'- cGGCUcGUGGUCUGCCGUgcuuuccGGCg -3'
miRNA:   3'- -UCGAaCGCCGGACGGCGuuuuu--CUGa -5'
9598 3' -53.8 NC_002577.1 + 142959 0.66 0.952657
Target:  5'- gGGCgUGCGGCgaGCacccagCGCGGAAcGACUc -3'
miRNA:   3'- -UCGaACGCCGgaCG------GCGUUUUuCUGA- -5'
9598 3' -53.8 NC_002577.1 + 139565 0.66 0.952657
Target:  5'- cGGCUcGUGGUCUGCCGUgcuuuccGGCg -3'
miRNA:   3'- -UCGAaCGCCGGACGGCGuuuuu--CUGa -5'
9598 3' -53.8 NC_002577.1 + 4422 0.66 0.939151
Target:  5'- uGGCUUGCuuguaGGCUguccGUCGgAGGAAGACa -3'
miRNA:   3'- -UCGAACG-----CCGGa---CGGCgUUUUUCUGa -5'
9598 3' -53.8 NC_002577.1 + 129192 0.66 0.939151
Target:  5'- uGGCUUGCuuguaGGCUguccGUCGgAGGAAGACa -3'
miRNA:   3'- -UCGAACG-----CCGGa---CGGCgUUUUUCUGa -5'
9598 3' -53.8 NC_002577.1 + 90831 0.67 0.933636
Target:  5'- uGCUgccgccGCGGCCaGCCgaacaaaaaacugGCAAAGAGAUUc -3'
miRNA:   3'- uCGAa-----CGCCGGaCGG-------------CGUUUUUCUGA- -5'
9598 3' -53.8 NC_002577.1 + 54824 0.67 0.927816
Target:  5'- gAGCUgcuucUGCGGCUgaacuugccgacGCCGCAGccgauGAGGCUc -3'
miRNA:   3'- -UCGA-----ACGCCGGa-----------CGGCGUUu----UUCUGA- -5'
9598 3' -53.8 NC_002577.1 + 112777 0.69 0.854797
Target:  5'- cAGCUUGCGGCUU-CCuuuuuuugGCAAGAuAGACg -3'
miRNA:   3'- -UCGAACGCCGGAcGG--------CGUUUU-UCUGa -5'
9598 3' -53.8 NC_002577.1 + 81278 0.69 0.838341
Target:  5'- cGCgcaGCGGCgaCUGCUGCAGAAAG-Cg -3'
miRNA:   3'- uCGaa-CGCCG--GACGGCGUUUUUCuGa -5'
9598 3' -53.8 NC_002577.1 + 111745 0.7 0.79388
Target:  5'- aGGCcaccCGGCCUGCCGCuAGAAcauccaGGACUc -3'
miRNA:   3'- -UCGaac-GCCGGACGGCG-UUUU------UCUGA- -5'
9598 3' -53.8 NC_002577.1 + 18103 0.71 0.77495
Target:  5'- cGUUUGCGuCCUGCaCGCAcuuuAAAGACg -3'
miRNA:   3'- uCGAACGCcGGACG-GCGUu---UUUCUGa -5'
9598 3' -53.8 NC_002577.1 + 138488 0.74 0.558541
Target:  5'- aGGCc-GCGGCCgcgGCCGC-GGAGGACg -3'
miRNA:   3'- -UCGaaCGCCGGa--CGGCGuUUUUCUGa -5'
9598 3' -53.8 NC_002577.1 + 158849 0.74 0.558541
Target:  5'- aGGCc-GCGGCCgcgGCCGC-GGAGGACg -3'
miRNA:   3'- -UCGaaCGCCGGa--CGGCGuUUUUCUGa -5'
9598 3' -53.8 NC_002577.1 + 123203 1.07 0.005145
Target:  5'- aAGCUUGCGGCCUGCCGCAAAAAGACUc -3'
miRNA:   3'- -UCGAACGCCGGACGGCGUUUUUCUGA- -5'
9598 3' -53.8 NC_002577.1 + 10411 1.07 0.005145
Target:  5'- aAGCUUGCGGCCUGCCGCAAAAAGACUc -3'
miRNA:   3'- -UCGAACGCCGGACGGCGUUUUUCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.