Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9598 | 5' | -54.9 | NC_002577.1 | + | 157389 | 0.68 | 0.869996 |
Target: 5'- uGUGGUUguuUUCuCGAUGCGCgCGCCUCg -3' miRNA: 3'- -UAUCGAau-AGGcGCUAUGCG-GCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 11010 | 0.68 | 0.854704 |
Target: 5'- -aGGCgg--CCgggaaGCGAUcgcGCGCCGUCCCg -3' miRNA: 3'- uaUCGaauaGG-----CGCUA---UGCGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 109504 | 0.66 | 0.942488 |
Target: 5'- uUAGCU--UCCGCGG-ACGCUGCg-- -3' miRNA: 3'- uAUCGAauAGGCGCUaUGCGGCGggg -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 10376 | 1.09 | 0.003719 |
Target: 5'- aAUAGCUUAUCCGCGAUACGCCGCCCCc -3' miRNA: 3'- -UAUCGAAUAGGCGCUAUGCGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 159066 | 0.71 | 0.72629 |
Target: 5'- gAUGGCgcccgccggCCGCGGccGCGCCGUCCUc -3' miRNA: 3'- -UAUCGaaua-----GGCGCUa-UGCGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 36493 | 0.66 | 0.942488 |
Target: 5'- --cGCg---UUGCGAUGCGCCGCgCa -3' miRNA: 3'- uauCGaauaGGCGCUAUGCGGCGgGg -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 78711 | 0.67 | 0.912925 |
Target: 5'- cUAGCUUGUCUGauauuuuuuuucuucCGggGCaaGUCGCCCCu -3' miRNA: 3'- uAUCGAAUAGGC---------------GCuaUG--CGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 129032 | 0.67 | 0.906848 |
Target: 5'- -gAGCgugUAacgauuUCCGCGGcgcgcgacgacgccGCGCCGUCCCg -3' miRNA: 3'- uaUCGa--AU------AGGCGCUa-------------UGCGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 110741 | 0.67 | 0.90435 |
Target: 5'- --cGCUcgcGUCCGCaAUuuuaaaucgGCGCCGCCCa -3' miRNA: 3'- uauCGAa--UAGGCGcUA---------UGCGGCGGGg -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 4315 | 0.67 | 0.891296 |
Target: 5'- -cGGaugGUCCGUGGUACGgUGUCCUg -3' miRNA: 3'- uaUCgaaUAGGCGCUAUGCgGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 140042 | 0.68 | 0.884421 |
Target: 5'- aAUGGCgu-UgCGCGAaaggucgccCGCUGCCCCa -3' miRNA: 3'- -UAUCGaauAgGCGCUau-------GCGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 143164 | 0.68 | 0.877319 |
Target: 5'- -cAGCUUGcgagucguUCCGCGcUGggugcucgcCGCaCGCCCCg -3' miRNA: 3'- uaUCGAAU--------AGGCGCuAU---------GCG-GCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 11249 | 0.68 | 0.869995 |
Target: 5'- -cGGCccgcgCCGgGGgcuagaaACGCCGCCCCc -3' miRNA: 3'- uaUCGaaua-GGCgCUa------UGCGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 139949 | 0.68 | 0.869995 |
Target: 5'- uGUGGUUguuUUCuCGAUGCGCgCGCCUCg -3' miRNA: 3'- -UAUCGAau-AGGcGCUAUGCG-GCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 139548 | 0.69 | 0.846748 |
Target: 5'- --uGCUU-UCCgGCGugcGCGCCGCCgCCg -3' miRNA: 3'- uauCGAAuAGG-CGCua-UGCGGCGG-GG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 3359 | 0.69 | 0.846748 |
Target: 5'- -cGGaacg-CCGCGGgacgaaGCCGCCCCg -3' miRNA: 3'- uaUCgaauaGGCGCUaug---CGGCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 132470 | 0.69 | 0.830251 |
Target: 5'- --cGCUUGggaaCCGCGGaccgcagccuuUGCGUCGCCgCCg -3' miRNA: 3'- uauCGAAUa---GGCGCU-----------AUGCGGCGG-GG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 159369 | 0.7 | 0.798757 |
Target: 5'- -gAGCUUG-CCGUGGUGCGCCcaguucaggggguucGCCUUc -3' miRNA: 3'- uaUCGAAUaGGCGCUAUGCGG---------------CGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 1332 | 0.7 | 0.795128 |
Target: 5'- -aGGCUgcgGUCCGCGGUucccaaGCGUccugCGUCCCc -3' miRNA: 3'- uaUCGAa--UAGGCGCUA------UGCG----GCGGGG- -5' |
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9598 | 5' | -54.9 | NC_002577.1 | + | 124823 | 0.71 | 0.728276 |
Target: 5'- cUGGacgAUCCGCGAgcgacuuaugaUGCGCgUGCCCCu -3' miRNA: 3'- uAUCgaaUAGGCGCU-----------AUGCG-GCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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