miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9599 3' -58.2 NC_002577.1 + 78435 0.67 0.783858
Target:  5'- aGAUGCCCCGUCGgaCUCGaauugCCGaccgaugaguuuaaCGGGc -3'
miRNA:   3'- -CUGCGGGGUAGCaaGAGCa----GGC--------------GCCU- -5'
9599 3' -58.2 NC_002577.1 + 11932 0.68 0.759249
Target:  5'- cGCGCCCUccggcGUCGUUCUC-UCCGgcgucCGGGu -3'
miRNA:   3'- cUGCGGGG-----UAGCAAGAGcAGGC-----GCCU- -5'
9599 3' -58.2 NC_002577.1 + 121682 0.68 0.759249
Target:  5'- cGCGCCCUccggcGUCGUUCUC-UCCGgcgucCGGGu -3'
miRNA:   3'- cUGCGGGG-----UAGCAAGAGcAGGC-----GCCU- -5'
9599 3' -58.2 NC_002577.1 + 160349 0.68 0.740511
Target:  5'- aGAgGCCgCGUCGg---CGUCCGCGaGAa -3'
miRNA:   3'- -CUgCGGgGUAGCaagaGCAGGCGC-CU- -5'
9599 3' -58.2 NC_002577.1 + 136988 0.68 0.740511
Target:  5'- aGAgGCCgCGUCGg---CGUCCGCGaGAa -3'
miRNA:   3'- -CUgCGGgGUAGCaagaGCAGGCGC-CU- -5'
9599 3' -58.2 NC_002577.1 + 158608 0.68 0.731004
Target:  5'- gGGCGCUCCGUCGUccCUCGcgCCGgacggcugaCGGAg -3'
miRNA:   3'- -CUGCGGGGUAGCAa-GAGCa-GGC---------GCCU- -5'
9599 3' -58.2 NC_002577.1 + 138729 0.68 0.731004
Target:  5'- gGGCGCUCCGUCGUccCUCGcgCCGgacggcugaCGGAg -3'
miRNA:   3'- -CUGCGGGGUAGCAa-GAGCa-GGC---------GCCU- -5'
9599 3' -58.2 NC_002577.1 + 139119 0.72 0.544155
Target:  5'- gGACGCCCCA-CGgcUCUCGUcCCGCa-- -3'
miRNA:   3'- -CUGCGGGGUaGCa-AGAGCA-GGCGccu -5'
9599 3' -58.2 NC_002577.1 + 158219 0.72 0.544155
Target:  5'- gGACGCCCCA-CGgcUCUCGUcCCGCa-- -3'
miRNA:   3'- -CUGCGGGGUaGCa-AGAGCA-GGCGccu -5'
9599 3' -58.2 NC_002577.1 + 10832 1.08 0.002614
Target:  5'- gGACGCCCCAUCGUUCUCGUCCGCGGAu -3'
miRNA:   3'- -CUGCGGGGUAGCAAGAGCAGGCGCCU- -5'
9599 3' -58.2 NC_002577.1 + 122781 1.08 0.002614
Target:  5'- gGACGCCCCAUCGUUCUCGUCCGCGGAu -3'
miRNA:   3'- -CUGCGGGGUAGCAAGAGCAGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.