miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9599 5' -54.9 NC_002577.1 + 17581 0.66 0.939973
Target:  5'- -gCCCagUgGCGCGAaacGGGCgGAGGUCCGAu -3'
miRNA:   3'- uaGGG--AgCGUGCU---CUUG-CUCUAGGCU- -5'
9599 5' -54.9 NC_002577.1 + 139511 0.67 0.928529
Target:  5'- cUCCCUUGgACGAGGACuGGAacggaacgccgcccUCUGAa -3'
miRNA:   3'- uAGGGAGCgUGCUCUUGcUCU--------------AGGCU- -5'
9599 5' -54.9 NC_002577.1 + 157826 0.67 0.928529
Target:  5'- cUCCCUUGgACGAGGACuGGAacggaacgccgcccUCUGAa -3'
miRNA:   3'- uAGGGAGCgUGCUCUUGcUCU--------------AGGCU- -5'
9599 5' -54.9 NC_002577.1 + 158597 0.67 0.919256
Target:  5'- cGUCCCUCGCGCcGGAcggcugACgGAGGugUCUGAa -3'
miRNA:   3'- -UAGGGAGCGUGcUCU------UG-CUCU--AGGCU- -5'
9599 5' -54.9 NC_002577.1 + 138740 0.67 0.919256
Target:  5'- cGUCCCUCGCGCcGGAcggcugACgGAGGugUCUGAa -3'
miRNA:   3'- -UAGGGAGCGUGcUCU------UG-CUCU--AGGCU- -5'
9599 5' -54.9 NC_002577.1 + 123098 0.67 0.913479
Target:  5'- --aCCUCGcCGCGGGuGCGGGG-CCGGg -3'
miRNA:   3'- uagGGAGC-GUGCUCuUGCUCUaGGCU- -5'
9599 5' -54.9 NC_002577.1 + 10516 0.67 0.913479
Target:  5'- --aCCUCGcCGCGGGuGCGGGG-CCGGg -3'
miRNA:   3'- uagGGAGC-GUGCUCuUGCUCUaGGCU- -5'
9599 5' -54.9 NC_002577.1 + 114450 0.7 0.809346
Target:  5'- -aCCCUCGUGCGAuauGAACGAGcgcUCCa- -3'
miRNA:   3'- uaGGGAGCGUGCU---CUUGCUCu--AGGcu -5'
9599 5' -54.9 NC_002577.1 + 11219 0.72 0.684616
Target:  5'- -cCCCUCcCACGGGGGCG-GAUUCGGg -3'
miRNA:   3'- uaGGGAGcGUGCUCUUGCuCUAGGCU- -5'
9599 5' -54.9 NC_002577.1 + 122395 0.72 0.684616
Target:  5'- -cCCCUCcCACGGGGGCG-GAUUCGGg -3'
miRNA:   3'- uaGGGAGcGUGCUCUUGCuCUAGGCU- -5'
9599 5' -54.9 NC_002577.1 + 10798 1.07 0.005639
Target:  5'- gAUCCCUCGCACGAGAACGAGAUCCGAc -3'
miRNA:   3'- -UAGGGAGCGUGCUCUUGCUCUAGGCU- -5'
9599 5' -54.9 NC_002577.1 + 122815 1.07 0.005639
Target:  5'- gAUCCCUCGCACGAGAACGAGAUCCGAc -3'
miRNA:   3'- -UAGGGAGCGUGCUCUUGCUCUAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.