miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
96 5' -54.2 AC_000006.1 + 26185 1.06 0.000964
Target:  5'- cUUCUUCGUCACCGAGCACAUCGCCACc -3'
miRNA:   3'- -AAGAAGCAGUGGCUCGUGUAGCGGUG- -5'
96 5' -54.2 AC_000006.1 + 25329 0.78 0.113595
Target:  5'- ---aUCcUCGCCGAGCGCGUCGUCGCc -3'
miRNA:   3'- aagaAGcAGUGGCUCGUGUAGCGGUG- -5'
96 5' -54.2 AC_000006.1 + 28238 0.72 0.267145
Target:  5'- gUUC-UCGUCaccGCCGAGUuCGUCGCCAa -3'
miRNA:   3'- -AAGaAGCAG---UGGCUCGuGUAGCGGUg -5'
96 5' -54.2 AC_000006.1 + 25882 0.71 0.321351
Target:  5'- -gCUUCGUCgACCGucucccGGUGCGUCGCCGu -3'
miRNA:   3'- aaGAAGCAG-UGGC------UCGUGUAGCGGUg -5'
96 5' -54.2 AC_000006.1 + 25831 0.69 0.402497
Target:  5'- gUCgcgcCGUCACCGAaaccaUGCGUCGCCGCc -3'
miRNA:   3'- aAGaa--GCAGUGGCUc----GUGUAGCGGUG- -5'
96 5' -54.2 AC_000006.1 + 29530 0.69 0.432289
Target:  5'- cUgUUUGUCACCGAGCGCGga--CACa -3'
miRNA:   3'- aAgAAGCAGUGGCUCGUGUagcgGUG- -5'
96 5' -54.2 AC_000006.1 + 19704 0.67 0.528635
Target:  5'- cUCUUgCGUCuggcauaucGCCGc-CGCGUCGCCACc -3'
miRNA:   3'- aAGAA-GCAG---------UGGCucGUGUAGCGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.