Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9600 | 3' | -54.2 | NC_002577.1 | + | 145140 | 0.66 | 0.949051 |
Target: 5'- aUCCGGCC-ACAGAUGagauguucUGCGAaguuuGCGGc -3' miRNA: 3'- gAGGCCGGaUGUUUAU--------GCGCU-----CGCCu -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 125566 | 0.67 | 0.940095 |
Target: 5'- gCUCCgGGCCggaGAGgcugGCGGGCGGGu -3' miRNA: 3'- -GAGG-CCGGaugUUUaug-CGCUCGCCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 9809 | 0.68 | 0.919306 |
Target: 5'- aUCCGGaaucCCgUGCAGGUACGCaccGCGGGc -3' miRNA: 3'- gAGGCC----GG-AUGUUUAUGCGcu-CGCCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 10303 | 0.69 | 0.850887 |
Target: 5'- gUCUGGCCgGCucg-GCGCGAGcCGGc -3' miRNA: 3'- gAGGCCGGaUGuuuaUGCGCUC-GCCu -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 9184 | 0.7 | 0.834624 |
Target: 5'- uUUCGGUgUcugGCGAugGCGCGGGCGGGg -3' miRNA: 3'- gAGGCCGgA---UGUUuaUGCGCUCGCCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 153082 | 0.7 | 0.834624 |
Target: 5'- gCUCCGGguCUUACAc---CGCGAGCGGc -3' miRNA: 3'- -GAGGCC--GGAUGUuuauGCGCUCGCCu -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 38341 | 0.71 | 0.799931 |
Target: 5'- -aUUGGCCU-Cug--GCGCGGGCGGAc -3' miRNA: 3'- gaGGCCGGAuGuuuaUGCGCUCGCCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 67042 | 0.71 | 0.799931 |
Target: 5'- -aCCGGCgaGCAAAUAUGCGAuaaucuCGGAa -3' miRNA: 3'- gaGGCCGgaUGUUUAUGCGCUc-----GCCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 125791 | 0.71 | 0.781631 |
Target: 5'- -cCCGGCgcuuCUGCGucUGCGCG-GCGGAc -3' miRNA: 3'- gaGGCCG----GAUGUuuAUGCGCuCGCCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 161187 | 0.71 | 0.75992 |
Target: 5'- uCUCCGGUaggcagaggcgguugGCGAGUGCgGCGAGCaGGAa -3' miRNA: 3'- -GAGGCCGga-------------UGUUUAUG-CGCUCG-CCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 33389 | 0.74 | 0.611656 |
Target: 5'- aUCC-GCCUcugACAAAUACGCGuGCGGu -3' miRNA: 3'- gAGGcCGGA---UGUUUAUGCGCuCGCCu -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 122023 | 0.72 | 0.713798 |
Target: 5'- -aCCGGCCcgGCGGA-ACGCGAuGCGGc -3' miRNA: 3'- gaGGCCGGa-UGUUUaUGCGCU-CGCCu -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 11695 | 0.74 | 0.591154 |
Target: 5'- -gCCGGCCUGCAGuu-CGggaaGAGCGGGg -3' miRNA: 3'- gaGGCCGGAUGUUuauGCg---CUCGCCU- -5' |
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9600 | 3' | -54.2 | NC_002577.1 | + | 121938 | 0.66 | 0.967407 |
Target: 5'- cCUCCGgacGCCgagAgGGAUGCGgagcgcgaGAGCGGAg -3' miRNA: 3'- -GAGGC---CGGa--UgUUUAUGCg-------CUCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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