miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9600 5' -64.4 NC_002577.1 + 11148 1.08 0.000709
Target:  5'- cGUUCCGCUGGCCGGCCCGCCGUCCGAa -3'
miRNA:   3'- -CAAGGCGACCGGCCGGGCGGCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 122466 1.08 0.000709
Target:  5'- cGUUCCGCUGGCCGGCCCGCCGUCCGAa -3'
miRNA:   3'- -CAAGGCGACCGGCCGGGCGGCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 159646 0.74 0.18174
Target:  5'- --aCCGaUUGGUCGcGCCCGCgCGUCCGGa -3'
miRNA:   3'- caaGGC-GACCGGC-CGGGCG-GCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 137692 0.74 0.18174
Target:  5'- --aCCGaUUGGUCGcGCCCGCgCGUCCGGa -3'
miRNA:   3'- caaGGC-GACCGGC-CGGGCG-GCAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 138279 0.74 0.199624
Target:  5'- --cCCGCcGGCCgcGGCCgCGCCGUCCu- -3'
miRNA:   3'- caaGGCGaCCGG--CCGG-GCGGCAGGcu -5'
9600 5' -64.4 NC_002577.1 + 159059 0.74 0.199624
Target:  5'- --cCCGCcGGCCgcGGCCgCGCCGUCCu- -3'
miRNA:   3'- caaGGCGaCCGG--CCGG-GCGGCAGGcu -5'
9600 5' -64.4 NC_002577.1 + 105956 0.73 0.214026
Target:  5'- --gCCGCgcugggaaGGCCGGCCCGUCGUgUGGc -3'
miRNA:   3'- caaGGCGa-------CCGGCCGGGCGGCAgGCU- -5'
9600 5' -64.4 NC_002577.1 + 74768 0.73 0.234607
Target:  5'- uGUUCaGCUGGCCuucagauucgucGGCCCGaCCGaUCCGGc -3'
miRNA:   3'- -CAAGgCGACCGG------------CCGGGC-GGC-AGGCU- -5'
9600 5' -64.4 NC_002577.1 + 162104 0.71 0.293982
Target:  5'- cGUUCCGCgcuguuagucguacgGGCCgcGGUCUGCCGUgCGGa -3'
miRNA:   3'- -CAAGGCGa--------------CCGG--CCGGGCGGCAgGCU- -5'
9600 5' -64.4 NC_002577.1 + 135224 0.71 0.293982
Target:  5'- cGUUCCGCgcuguuagucguacgGGCCgcGGUCUGCCGUgCGGa -3'
miRNA:   3'- -CAAGGCGa--------------CCGG--CCGGGCGGCAgGCU- -5'
9600 5' -64.4 NC_002577.1 + 10320 0.71 0.313067
Target:  5'- aGUUCCGaagugacuuuguCUGGCCGGCUCGgCGcgagCCGGc -3'
miRNA:   3'- -CAAGGC------------GACCGGCCGGGCgGCa---GGCU- -5'
9600 5' -64.4 NC_002577.1 + 123294 0.71 0.313068
Target:  5'- aGUUCCGaagugacuuuguCUGGCCGGCUCGgCGcgagCCGGc -3'
miRNA:   3'- -CAAGGC------------GACCGGCCGGGCgGCa---GGCU- -5'
9600 5' -64.4 NC_002577.1 + 10569 0.7 0.340909
Target:  5'- uGUUCCGCgagcGGCguuCGGCCgCGUCG-CCGAc -3'
miRNA:   3'- -CAAGGCGa---CCG---GCCGG-GCGGCaGGCU- -5'
9600 5' -64.4 NC_002577.1 + 123045 0.7 0.340909
Target:  5'- uGUUCCGCgagcGGCguuCGGCCgCGUCG-CCGAc -3'
miRNA:   3'- -CAAGGCGa---CCG---GCCGG-GCGGCaGGCU- -5'
9600 5' -64.4 NC_002577.1 + 78997 0.69 0.393813
Target:  5'- --cCCGC-GGCCGGUCUGuuGUUCGc -3'
miRNA:   3'- caaGGCGaCCGGCCGGGCggCAGGCu -5'
9600 5' -64.4 NC_002577.1 + 123506 0.68 0.418058
Target:  5'- -cUCCGa-GGCCGGCUcgCGCCGagCCGGc -3'
miRNA:   3'- caAGGCgaCCGGCCGG--GCGGCa-GGCU- -5'
9600 5' -64.4 NC_002577.1 + 10107 0.68 0.418059
Target:  5'- -cUCCGa-GGCCGGCUcgCGCCGagCCGGc -3'
miRNA:   3'- caAGGCgaCCGGCCGG--GCGGCa-GGCU- -5'
9600 5' -64.4 NC_002577.1 + 138362 0.68 0.451756
Target:  5'- --cCCGCcGGCCGGCCggUGCUgGUUCGGg -3'
miRNA:   3'- caaGGCGaCCGGCCGG--GCGG-CAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 158975 0.68 0.451756
Target:  5'- --cCCGCcGGCCGGCCggUGCUgGUUCGGg -3'
miRNA:   3'- caaGGCGaCCGGCCGG--GCGG-CAGGCU- -5'
9600 5' -64.4 NC_002577.1 + 11700 0.67 0.486885
Target:  5'- ----aGCcGGCCGGCCUGCaGUUCGGg -3'
miRNA:   3'- caaggCGaCCGGCCGGGCGgCAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.