miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9601 3' -47.4 NC_002577.1 + 59434 0.66 0.999674
Target:  5'- uUUCGUAUgGCGAgaACCAGgggAGGAUa -3'
miRNA:   3'- cAAGCGUGgCGCU--UGGUUauaUUCUA- -5'
9601 3' -47.4 NC_002577.1 + 153378 0.67 0.999482
Target:  5'- --gCGUACCGCGcGCCAauuuucGUGUAGGu- -3'
miRNA:   3'- caaGCGUGGCGCuUGGU------UAUAUUCua -5'
9601 3' -47.4 NC_002577.1 + 7894 0.67 0.999145
Target:  5'- -aUCGCGagcgcgauccgaauCCGCGGGCCGAg--GGGAa -3'
miRNA:   3'- caAGCGU--------------GGCGCUUGGUUauaUUCUa -5'
9601 3' -47.4 NC_002577.1 + 124765 0.67 0.998927
Target:  5'- --gCGCACCGCGGGCCucggcgcGGUa -3'
miRNA:   3'- caaGCGUGGCGCUUGGuuauauuCUA- -5'
9601 3' -47.4 NC_002577.1 + 8849 0.67 0.998927
Target:  5'- --gCGCACCGCGGGCCucggcgcGGUa -3'
miRNA:   3'- caaGCGUGGCGCUUGGuuauauuCUA- -5'
9601 3' -47.4 NC_002577.1 + 70742 0.67 0.998789
Target:  5'- uGUUCGgACCGCaugGCCAAUuugugauacacgGUGAGAUg -3'
miRNA:   3'- -CAAGCgUGGCGcu-UGGUUA------------UAUUCUA- -5'
9601 3' -47.4 NC_002577.1 + 61175 0.67 0.998764
Target:  5'- uUUCGUACCGCGGcgcgccuuuccacACUAucgAUGAGAc -3'
miRNA:   3'- cAAGCGUGGCGCU-------------UGGUua-UAUUCUa -5'
9601 3' -47.4 NC_002577.1 + 58182 0.69 0.996366
Target:  5'- -aUCGCGCCGaCGAugCAGgcgcGGAUa -3'
miRNA:   3'- caAGCGUGGC-GCUugGUUauauUCUA- -5'
9601 3' -47.4 NC_002577.1 + 89298 0.69 0.995715
Target:  5'- -aUCGCACagCGCGAaaucGCCAGUAUAAc-- -3'
miRNA:   3'- caAGCGUG--GCGCU----UGGUUAUAUUcua -5'
9601 3' -47.4 NC_002577.1 + 125696 0.7 0.993171
Target:  5'- -aUCGCgAUCGCGAACCGGUAa----- -3'
miRNA:   3'- caAGCG-UGGCGCUUGGUUAUauucua -5'
9601 3' -47.4 NC_002577.1 + 7918 0.7 0.993171
Target:  5'- -aUCGCgAUCGCGAACCGGUAa----- -3'
miRNA:   3'- caAGCG-UGGCGCUUGGUUAUauucua -5'
9601 3' -47.4 NC_002577.1 + 46981 0.72 0.975335
Target:  5'- --aCGgGCCGCGu-CCGAUGUAAGGa -3'
miRNA:   3'- caaGCgUGGCGCuuGGUUAUAUUCUa -5'
9601 3' -47.4 NC_002577.1 + 61158 0.74 0.941103
Target:  5'- --cCGCACCGaGGACCGuUAUGAGAg -3'
miRNA:   3'- caaGCGUGGCgCUUGGUuAUAUUCUa -5'
9601 3' -47.4 NC_002577.1 + 11368 1.06 0.027638
Target:  5'- cGUUCGCACCGCGAACCAAUAUAAGAUu -3'
miRNA:   3'- -CAAGCGUGGCGCUUGGUUAUAUUCUA- -5'
9601 3' -47.4 NC_002577.1 + 122246 1.06 0.027638
Target:  5'- cGUUCGCACCGCGAACCAAUAUAAGAUu -3'
miRNA:   3'- -CAAGCGUGGCGCUUGGUUAUAUUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.