Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9603 | 3' | -60.2 | NC_002577.1 | + | 159895 | 0.66 | 0.802557 |
Target: 5'- aAGCGUCcACCagcucguucagcGGcCGGGUaGACGCGa -3' miRNA: 3'- cUCGCAGcUGG------------CCaGCCCAgCUGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 19321 | 1.08 | 0.002021 |
Target: 5'- cGAGCGUCGACCGGUCGGGUCGACGCGu -3' miRNA: 3'- -CUCGCAGCUGGCCAGCCCAGCUGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 12045 | 0.74 | 0.343885 |
Target: 5'- cGGGuCGUCGcCCGGgucgucgccCGGGUCGGCGCc -3' miRNA: 3'- -CUC-GCAGCuGGCCa--------GCCCAGCUGCGc -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 3612 | 0.72 | 0.456716 |
Target: 5'- cGGGCGcgaagCGGCUGGgaUCGGGUCG-CGUGg -3' miRNA: 3'- -CUCGCa----GCUGGCC--AGCCCAGCuGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 99132 | 0.72 | 0.473522 |
Target: 5'- aGAaCGUCGACCGaGgCGGGUCGuugacacACGCGg -3' miRNA: 3'- -CUcGCAGCUGGC-CaGCCCAGC-------UGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 11840 | 0.71 | 0.510796 |
Target: 5'- gGGGCGcgCGGaucagCGGUCGGGUCGcgauCGCGu -3' miRNA: 3'- -CUCGCa-GCUg----GCCAGCCCAGCu---GCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 123038 | 0.7 | 0.586594 |
Target: 5'- cGAGCGgcguUCGGCCGcGUCGc--CGACGCGg -3' miRNA: 3'- -CUCGC----AGCUGGC-CAGCccaGCUGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 141526 | 0.68 | 0.654531 |
Target: 5'- cGGCGUCGcCaCGGUUGGacCGGCGCGc -3' miRNA: 3'- cUCGCAGCuG-GCCAGCCcaGCUGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 11985 | 0.67 | 0.731019 |
Target: 5'- -cGCGUCGucgcCCGGgucgucgccCGGGUCGuCGCc -3' miRNA: 3'- cuCGCAGCu---GGCCa--------GCCCAGCuGCGc -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 74992 | 0.67 | 0.734747 |
Target: 5'- cGAGCaGUUuugauguucuggccgGAUCGGUCGGGcCGACGa- -3' miRNA: 3'- -CUCG-CAG---------------CUGGCCAGCCCaGCUGCgc -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 163261 | 0.67 | 0.749525 |
Target: 5'- cGAGCGcccgcgCGGCCGG-CGGGcaugucCGGCGgGg -3' miRNA: 3'- -CUCGCa-----GCUGGCCaGCCCa-----GCUGCgC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 94258 | 0.66 | 0.767658 |
Target: 5'- cGAGCGU-GGCCGGUCGucGUUGAUGa- -3' miRNA: 3'- -CUCGCAgCUGGCCAGCc-CAGCUGCgc -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 7935 | 0.66 | 0.767658 |
Target: 5'- cGGCGUucCGGgCGGUCGGcgaGUCGGCGg- -3' miRNA: 3'- cUCGCA--GCUgGCCAGCC---CAGCUGCgc -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 4547 | 0.66 | 0.785356 |
Target: 5'- cGGGgGUCGGCU-GUUGGGUaaGACGUGg -3' miRNA: 3'- -CUCgCAGCUGGcCAGCCCAg-CUGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 11797 | 0.69 | 0.60595 |
Target: 5'- cGGGCGaCGAcCCGGgcgacgacgCGGGcgaCGACGCGg -3' miRNA: 3'- -CUCGCaGCU-GGCCa--------GCCCa--GCUGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 10576 | 0.7 | 0.586594 |
Target: 5'- cGAGCGgcguUCGGCCGcGUCGc--CGACGCGg -3' miRNA: 3'- -CUCGC----AGCUGGC-CAGCccaGCUGCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 109390 | 0.71 | 0.520074 |
Target: 5'- aGAGUGU--GCCGGcuUCGGGUCGA-GCGg -3' miRNA: 3'- -CUCGCAgcUGGCC--AGCCCAGCUgCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 121773 | 0.71 | 0.510796 |
Target: 5'- gGGGCGcgCGGaucagCGGUCGGGUCGcgauCGCGu -3' miRNA: 3'- -CUCGCa-GCUg----GCCAGCCCAGCu---GCGC- -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 19131 | 0.71 | 0.510796 |
Target: 5'- -cGCGUCGACCcGaCcGGUCGACGCu -3' miRNA: 3'- cuCGCAGCUGGcCaGcCCAGCUGCGc -5' |
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9603 | 3' | -60.2 | NC_002577.1 | + | 137443 | 0.66 | 0.802557 |
Target: 5'- aAGCGUCcACCagcucguucagcGGcCGGGUaGACGCGa -3' miRNA: 3'- cUCGCAGcUGG------------CCaGCCCAgCUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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