Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 129067 | 0.66 | 0.785356 |
|
Target: 5'- cGGGgGUCGGCU-GUUGGGUaaGACGUGg -3' miRNA: 3'- -CUCgCAGCUGGcCAGCCCAg-CUGCGC- -5' |
|||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 130001 | 0.71 | 0.492451 |
|
Target: 5'- cGGGCGcgaagCGGCUGGgaaUCGGGUCG-CGUGg -3' miRNA: 3'- -CUCGCa----GCUGGCC---AGCCCAGCuGCGC- -5' |
|||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 134067 | 0.67 | 0.749525 |
|
Target: 5'- cGAGCGcccgcgCGGCCGG-CGGGcaugucCGGCGgGg -3' miRNA: 3'- -CUCGCa-----GCUGGCCaGCCCa-----GCUGCgC- -5' |
|||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 137443 | 0.66 | 0.802557 |
|
Target: 5'- aAGCGUCcACCagcucguucagcGGcCGGGUaGACGCGa -3' miRNA: 3'- cUCGCAGcUGG------------CCaGCCCAgCUGCGC- -5' |
|||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 141526 | 0.68 | 0.654531 |
|
Target: 5'- cGGCGUCGcCaCGGUUGGacCGGCGCGc -3' miRNA: 3'- cUCGCAGCuG-GCCAGCCcaGCUGCGC- -5' |
|||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 155811 | 0.68 | 0.654531 |
|
Target: 5'- cGGCGUCGcCaCGGUUGGacCGGCGCGc -3' miRNA: 3'- cUCGCAGCuG-GCCAGCCcaGCUGCGC- -5' |
|||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 159895 | 0.66 | 0.802557 |
|
Target: 5'- aAGCGUCcACCagcucguucagcGGcCGGGUaGACGCGa -3' miRNA: 3'- cUCGCAGcUGG------------CCaGCCCAgCUGCGC- -5' |
|||||||
| 9603 | 3' | -60.2 | NC_002577.1 | + | 163261 | 0.67 | 0.749525 |
|
Target: 5'- cGAGCGcccgcgCGGCCGG-CGGGcaugucCGGCGgGg -3' miRNA: 3'- -CUCGCa-----GCUGGCCaGCCCa-----GCUGCgC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home