miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9604 3' -52.9 NC_002577.1 + 108545 0.66 0.980505
Target:  5'- gGCUgguuaUACgUCUgGCGCUcgugcaguugGC-CUAUCCGGa -3'
miRNA:   3'- -CGA-----AUGgAGA-CGCGA----------CGaGAUAGGCC- -5'
9604 3' -52.9 NC_002577.1 + 60137 0.66 0.978248
Target:  5'- uGCUcGCCuUCUGaCGCuUGCUCagAUCCa- -3'
miRNA:   3'- -CGAaUGG-AGAC-GCG-ACGAGa-UAGGcc -5'
9604 3' -52.9 NC_002577.1 + 105368 0.67 0.967265
Target:  5'- ----uUCUCUGuCGCUGCUCUugaCCGa -3'
miRNA:   3'- cgaauGGAGAC-GCGACGAGAua-GGCc -5'
9604 3' -52.9 NC_002577.1 + 154412 0.68 0.929505
Target:  5'- uGCUUACCUC-GUGaUUGCUgUcgUCGGg -3'
miRNA:   3'- -CGAAUGGAGaCGC-GACGAgAuaGGCC- -5'
9604 3' -52.9 NC_002577.1 + 27787 0.69 0.924104
Target:  5'- uGCgaACCUCUGCcggGCgaucgaugUGCUCcccGUCCGGg -3'
miRNA:   3'- -CGaaUGGAGACG---CG--------ACGAGa--UAGGCC- -5'
9604 3' -52.9 NC_002577.1 + 70807 0.69 0.906429
Target:  5'- cGCgcagUACCUCcgGCGUUGCggcagCUAugacauaggaaaUCCGGu -3'
miRNA:   3'- -CGa---AUGGAGa-CGCGACGa----GAU------------AGGCC- -5'
9604 3' -52.9 NC_002577.1 + 22388 0.69 0.906429
Target:  5'- aGCUUGCaauaaauaUUCUGCGCUGCgaccuuugUCgugCCGGu -3'
miRNA:   3'- -CGAAUG--------GAGACGCGACG--------AGauaGGCC- -5'
9604 3' -52.9 NC_002577.1 + 112107 0.7 0.893435
Target:  5'- uGUUUGCCUUUG-GacaUGC-CUAUCCGGu -3'
miRNA:   3'- -CGAAUGGAGACgCg--ACGaGAUAGGCC- -5'
9604 3' -52.9 NC_002577.1 + 147445 0.7 0.89276
Target:  5'- cGCUgAUCUCUgccGCGCUGCUCUggaauacAUCCc- -3'
miRNA:   3'- -CGAaUGGAGA---CGCGACGAGA-------UAGGcc -5'
9604 3' -52.9 NC_002577.1 + 23581 0.7 0.872189
Target:  5'- aGCgcgAUCUCUGCaGUUGCU--AUCCGGc -3'
miRNA:   3'- -CGaa-UGGAGACG-CGACGAgaUAGGCC- -5'
9604 3' -52.9 NC_002577.1 + 20992 0.76 0.57579
Target:  5'- ----cCCUCUGCuCcGCUCUAUCCGGa -3'
miRNA:   3'- cgaauGGAGACGcGaCGAGAUAGGCC- -5'
9604 3' -52.9 NC_002577.1 + 21215 1.14 0.003112
Target:  5'- uGCUUACCUCUGCGCUGCUCUAUCCGGg -3'
miRNA:   3'- -CGAAUGGAGACGCGACGAGAUAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.