Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9604 | 5' | -57.7 | NC_002577.1 | + | 158319 | 0.68 | 0.754388 |
Target: 5'- -gCgGGAgGGAGCGcgguggcGGGCGGGGGGGGc -3' miRNA: 3'- gaGgCCUaUCUCGC-------CUCGUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 159258 | 0.66 | 0.843006 |
Target: 5'- -aCCGGGaGGGGaccgGGAGUAGAGaGGAa -3' miRNA: 3'- gaGGCCUaUCUCg---CCUCGUCUC-CCUc -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 162481 | 0.7 | 0.637022 |
Target: 5'- aUCCGGA-GGAGCGGuuuccGCAGcccuAGGGAu -3' miRNA: 3'- gAGGCCUaUCUCGCCu----CGUC----UCCCUc -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 162639 | 0.68 | 0.726588 |
Target: 5'- uUUCGGAgaaggUAGGGCGGAGUucuGAGGcuuGAGg -3' miRNA: 3'- gAGGCCU-----AUCUCGCCUCGu--CUCC---CUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 162755 | 0.67 | 0.801016 |
Target: 5'- --aCGGAUAGAaccgcucaaucGgGGGGgGGGGGGGGg -3' miRNA: 3'- gagGCCUAUCU-----------CgCCUCgUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 162961 | 0.69 | 0.716837 |
Target: 5'- -cCUGGGUcucGGGGgGGGGgGGGGGGGGc -3' miRNA: 3'- gaGGCCUA---UCUCgCCUCgUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 164246 | 0.68 | 0.745845 |
Target: 5'- uUuuGGggGGGGgGGugaaauGCAGGGGGGGa -3' miRNA: 3'- gAggCCuaUCUCgCCu-----CGUCUCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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