Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9604 | 5' | -57.7 | NC_002577.1 | + | 135370 | 0.73 | 0.479917 |
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Target: 5'- -gUCGG--GGGGgGGGGCGGGGGGAGu -3' miRNA: 3'- gaGGCCuaUCUCgCCUCGUCUCCCUC- -5' |
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| 9604 | 5' | -57.7 | NC_002577.1 | + | 8508 | 0.7 | 0.626943 |
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Target: 5'- aCUCCGugucGAU--GGCGGGGgGGGGGGGGg -3' miRNA: 3'- -GAGGC----CUAucUCGCCUCgUCUCCCUC- -5' |
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| 9604 | 5' | -57.7 | NC_002577.1 | + | 134847 | 0.7 | 0.637022 |
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Target: 5'- aUCCGGA-GGAGCGGuuuccGCAGcccuAGGGAu -3' miRNA: 3'- gAGGCCUaUCUCGCCu----CGUC----UCCCUc -5' |
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| 9604 | 5' | -57.7 | NC_002577.1 | + | 134689 | 0.7 | 0.657158 |
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Target: 5'- uUUCGGAgaaggUAGGGCGGAGUucugaggcuuGAGGGAc -3' miRNA: 3'- gAGGCCU-----AUCUCGCCUCGu---------CUCCCUc -5' |
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| 9604 | 5' | -57.7 | NC_002577.1 | + | 134366 | 0.69 | 0.716837 |
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Target: 5'- -cCUGGGUcucGGGGgGGGGgGGGGGGGGc -3' miRNA: 3'- gaGGCCUA---UCUCgCCUCgUCUCCCUC- -5' |
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| 9604 | 5' | -57.7 | NC_002577.1 | + | 164246 | 0.68 | 0.745845 |
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Target: 5'- uUuuGGggGGGGgGGugaaauGCAGGGGGGGa -3' miRNA: 3'- gAggCCuaUCUCgCCu-----CGUCUCCCUC- -5' |
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| 9604 | 5' | -57.7 | NC_002577.1 | + | 9177 | 0.66 | 0.873305 |
|
Target: 5'- gUCUGGcgAuGGCGcGGGCGG-GGGAGu -3' miRNA: 3'- gAGGCCuaUcUCGC-CUCGUCuCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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