miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9605 3' -50.8 NC_002577.1 + 33766 0.66 0.993508
Target:  5'- -gGCGGAAgacaaGCUCCuguaugaaUCGGGCGCa---- -3'
miRNA:   3'- caUGCUUU-----UGAGG--------AGCCCGCGauuca -5'
9605 3' -50.8 NC_002577.1 + 33448 0.67 0.987234
Target:  5'- -cGCGAAc-CUUCUCGGGUGCUc--- -3'
miRNA:   3'- caUGCUUuuGAGGAGCCCGCGAuuca -5'
9605 3' -50.8 NC_002577.1 + 59817 0.68 0.981035
Target:  5'- -gGCGAGAGCUCCguaaugCGccgaaggaaaaacuGGCGCUGAa- -3'
miRNA:   3'- caUGCUUUUGAGGa-----GC--------------CCGCGAUUca -5'
9605 3' -50.8 NC_002577.1 + 61999 0.68 0.979471
Target:  5'- uUACuAAAAUcgUCCUCGGGCGCg---- -3'
miRNA:   3'- cAUGcUUUUG--AGGAGCCCGCGauuca -5'
9605 3' -50.8 NC_002577.1 + 138004 0.68 0.971673
Target:  5'- -aGCGAAAuCUgCUUUGGGCGCUAc-- -3'
miRNA:   3'- caUGCUUUuGA-GGAGCCCGCGAUuca -5'
9605 3' -50.8 NC_002577.1 + 159334 0.68 0.971673
Target:  5'- -aGCGAAAuCUgCUUUGGGCGCUAc-- -3'
miRNA:   3'- caUGCUUUuGA-GGAGCCCGCGAUuca -5'
9605 3' -50.8 NC_002577.1 + 54197 0.69 0.965412
Target:  5'- -gAUGAAAauacGCUCCgaaccuaCGGGCGCUAAa- -3'
miRNA:   3'- caUGCUUU----UGAGGa------GCCCGCGAUUca -5'
9605 3' -50.8 NC_002577.1 + 150656 0.7 0.936033
Target:  5'- -gGCGGGAAUacacuuUCCUggaCGGGCGUUGAGg -3'
miRNA:   3'- caUGCUUUUG------AGGA---GCCCGCGAUUCa -5'
9605 3' -50.8 NC_002577.1 + 154527 0.7 0.936033
Target:  5'- -cACGG--GCcCCUUGGGUGCUGGGg -3'
miRNA:   3'- caUGCUuuUGaGGAGCCCGCGAUUCa -5'
9605 3' -50.8 NC_002577.1 + 137403 0.73 0.848924
Target:  5'- -cGCGAAcgguucGGCUCCUCGGGgGCgccagGAGc -3'
miRNA:   3'- caUGCUU------UUGAGGAGCCCgCGa----UUCa -5'
9605 3' -50.8 NC_002577.1 + 159934 0.73 0.848924
Target:  5'- -cGCGAAcgguucGGCUCCUCGGGgGCgccggGAGc -3'
miRNA:   3'- caUGCUU------UUGAGGAGCCCgCGa----UUCa -5'
9605 3' -50.8 NC_002577.1 + 24958 1.08 0.011419
Target:  5'- cGUACGAAAACUCCUCGGGCGCUAAGUc -3'
miRNA:   3'- -CAUGCUUUUGAGGAGCCCGCGAUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.