Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 103161 | 0.68 | 0.95588 |
Target: 5'- -gACCgguaaaaaaaagCGCACGGAGCGGcGUGCagaUCGUg -3' miRNA: 3'- aaUGG------------GCGUGCCUCGCU-UAUGa--AGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 103070 | 0.68 | 0.95588 |
Target: 5'- aUACCCGCuCGGAgGCG-GUACUa-GCu -3' miRNA: 3'- aAUGGGCGuGCCU-CGCuUAUGAagCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 134256 | 0.68 | 0.951834 |
Target: 5'- aUGCCCGC-CGGccgcGCGGGcGCU-CGCu -3' miRNA: 3'- aAUGGGCGuGCCu---CGCUUaUGAaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 38360 | 0.68 | 0.951834 |
Target: 5'- -gGCCCGC-CGG-GCGAcaaAUGCgcUGCg -3' miRNA: 3'- aaUGGGCGuGCCuCGCU---UAUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 163072 | 0.68 | 0.951834 |
Target: 5'- aUGCCCGC-CGGccgcGCGGGcGCU-CGCu -3' miRNA: 3'- aAUGGGCGuGCCu---CGCUUaUGAaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 125377 | 0.69 | 0.935248 |
Target: 5'- -cGCCCGCcagccucuccggccCGGAGCGGAaACgcCGCg -3' miRNA: 3'- aaUGGGCGu-------------GCCUCGCUUaUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 8237 | 0.69 | 0.935248 |
Target: 5'- -cGCCCGCcagccucuccggccCGGAGCGGAaACgcCGCg -3' miRNA: 3'- aaUGGGCGu-------------GCCUCGCUUaUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 160433 | 0.69 | 0.927926 |
Target: 5'- -gGCCCGCACGGGcucGgGAGaACUU-GCg -3' miRNA: 3'- aaUGGGCGUGCCU---CgCUUaUGAAgCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 136904 | 0.69 | 0.927926 |
Target: 5'- -gGCCCGCACGGGcucGgGAGaACUU-GCg -3' miRNA: 3'- aaUGGGCGUGCCU---CgCUUaUGAAgCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 139348 | 0.69 | 0.916613 |
Target: 5'- gUACCCGCGCccGGCGGcgGCg-CGCa -3' miRNA: 3'- aAUGGGCGUGccUCGCUuaUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 157990 | 0.69 | 0.916613 |
Target: 5'- gUACCCGCGCccGGCGGcgGCg-CGCa -3' miRNA: 3'- aAUGGGCGUGccUCGCUuaUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 71751 | 0.69 | 0.910581 |
Target: 5'- -gACCCGCGauUGGGGCGAA-ACgaUCGUg -3' miRNA: 3'- aaUGGGCGU--GCCUCGCUUaUGa-AGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 163257 | 0.7 | 0.906843 |
Target: 5'- -cGCCCGCGCGGccggcgggcauguccGGCGGggAUGCagCGUg -3' miRNA: 3'- aaUGGGCGUGCC---------------UCGCU--UAUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 134071 | 0.7 | 0.906843 |
Target: 5'- -cGCCCGCGCGGccggcgggcauguccGGCGGggAUGCagCGUg -3' miRNA: 3'- aaUGGGCGUGCC---------------UCGCU--UAUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 162911 | 0.7 | 0.876756 |
Target: 5'- -gACCUuCACGGAGCGGA-GCUcgUUGCa -3' miRNA: 3'- aaUGGGcGUGCCUCGCUUaUGA--AGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 134417 | 0.7 | 0.876756 |
Target: 5'- -gACCUuCACGGAGCGGA-GCUcgUUGCa -3' miRNA: 3'- aaUGGGcGUGCCUCGCUUaUGA--AGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 109171 | 0.71 | 0.861589 |
Target: 5'- ---gUCGCuCGGAGCGAAUAUaUCGUa -3' miRNA: 3'- aaugGGCGuGCCUCGCUUAUGaAGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 20829 | 0.71 | 0.837225 |
Target: 5'- -aGCauGCGCGGAG-GAAUGCUaUCGCu -3' miRNA: 3'- aaUGggCGUGCCUCgCUUAUGA-AGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 1313 | 0.73 | 0.764275 |
Target: 5'- -gGCUCGCGCGcGAGCGcAUGCg-CGCa -3' miRNA: 3'- aaUGGGCGUGC-CUCGCuUAUGaaGCG- -5' |
|||||||
9605 | 5' | -52.3 | NC_002577.1 | + | 132301 | 0.73 | 0.764275 |
Target: 5'- -gGCUCGCGCGcGAGCGcAUGCg-CGCa -3' miRNA: 3'- aaUGGGCGUGC-CUCGCuUAUGaaGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home