miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9606 3' -54.8 NC_002577.1 + 1037 0.71 0.770288
Target:  5'- -uUUCGCGGGGG-GCUgGcGGAGACCg -3'
miRNA:   3'- gcGAGCGCUCUCgCGAgUaUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 11497 0.74 0.610664
Target:  5'- cCGUUCGCGGGAagcgccggaccgGCGCUCuaagcGGAGAUCc -3'
miRNA:   3'- -GCGAGCGCUCU------------CGCGAGua---UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 11696 0.66 0.951573
Target:  5'- uGCggagCGCGAGAGCGgagccGGGGACg -3'
miRNA:   3'- gCGa---GCGCUCUCGCgaguaUCUCUGg -5'
9606 3' -54.8 NC_002577.1 + 16549 0.66 0.947386
Target:  5'- gGCUCGCagccGGAGcCGaagUCGgucUGGAGACCg -3'
miRNA:   3'- gCGAGCGc---UCUC-GCg--AGU---AUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 20708 0.67 0.928298
Target:  5'- aGgUCGCGGaAGCGCUCGgGGAacuucacaugccGACCc -3'
miRNA:   3'- gCgAGCGCUcUCGCGAGUaUCU------------CUGG- -5'
9606 3' -54.8 NC_002577.1 + 32771 0.66 0.942968
Target:  5'- aGCcauaCGCGAGAacuGCaGUUCuuauUGGAGGCCa -3'
miRNA:   3'- gCGa---GCGCUCU---CG-CGAGu---AUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 33505 1.12 0.00269
Target:  5'- cCGCUCGCGAGAGCGCUCAUAGAGACCu -3'
miRNA:   3'- -GCGAGCGCUCUCGCGAGUAUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 48857 0.69 0.855762
Target:  5'- -cCUCGaCGAGAGCGCaUCucuggggAUGGGGACa -3'
miRNA:   3'- gcGAGC-GCUCUCGCG-AG-------UAUCUCUGg -5'
9606 3' -54.8 NC_002577.1 + 57418 0.68 0.905412
Target:  5'- gGUUgGCGAuuGuGCGCUCAUcuggggcgguggAGAGAUCg -3'
miRNA:   3'- gCGAgCGCU--CuCGCGAGUA------------UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 59423 0.68 0.878803
Target:  5'- gCGCUCGCGAuGGCGCUCGg------- -3'
miRNA:   3'- -GCGAGCGCUcUCGCGAGUaucucugg -5'
9606 3' -54.8 NC_002577.1 + 72137 0.69 0.864169
Target:  5'- gGCUUGCGAgccGAGC-UUUAUGGAGugCc -3'
miRNA:   3'- gCGAGCGCU---CUCGcGAGUAUCUCugG- -5'
9606 3' -54.8 NC_002577.1 + 81096 0.66 0.938315
Target:  5'- aGCUcaCGCGcugcAGAGCGCg---AGAGACg -3'
miRNA:   3'- gCGA--GCGC----UCUCGCGaguaUCUCUGg -5'
9606 3' -54.8 NC_002577.1 + 81264 0.71 0.751291
Target:  5'- gGC-CGCGGGcguGGCGCagCAcGGGGACCg -3'
miRNA:   3'- gCGaGCGCUC---UCGCGa-GUaUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 92163 0.69 0.848702
Target:  5'- aGCagCGUugGAGuGCGCgaacuggugCGUGGAGACCg -3'
miRNA:   3'- gCGa-GCG--CUCuCGCGa--------GUAUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 95365 0.68 0.871592
Target:  5'- gGCggCGCGAcauucGAGUGCcUAUAGgAGACCg -3'
miRNA:   3'- gCGa-GCGCU-----CUCGCGaGUAUC-UCUGG- -5'
9606 3' -54.8 NC_002577.1 + 98390 0.69 0.848702
Target:  5'- gCGuCUC-CGAGAGCGUaUAUGGAGugGCCu -3'
miRNA:   3'- -GC-GAGcGCUCUCGCGaGUAUCUC--UGG- -5'
9606 3' -54.8 NC_002577.1 + 101177 0.7 0.797841
Target:  5'- gCGUUCG-GGGGGCGUUUc-GGGGACCg -3'
miRNA:   3'- -GCGAGCgCUCUCGCGAGuaUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 102800 0.69 0.848702
Target:  5'- aGCUCaaGaAGAcGCGCUCGUAGaAGugCu -3'
miRNA:   3'- gCGAGcgC-UCU-CGCGAGUAUC-UCugG- -5'
9606 3' -54.8 NC_002577.1 + 121918 0.66 0.951573
Target:  5'- uGCggagCGCGAGAGCGgagccGGGGACg -3'
miRNA:   3'- gCGa---GCGCUCUCGCgaguaUCUCUGg -5'
9606 3' -54.8 NC_002577.1 + 122117 0.74 0.610664
Target:  5'- cCGUUCGCGGGAagcgccggaccgGCGCUCuaagcGGAGAUCc -3'
miRNA:   3'- -GCGAGCGCUCU------------CGCGAGua---UCUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.