miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9606 3' -54.8 NC_002577.1 + 92163 0.69 0.848702
Target:  5'- aGCagCGUugGAGuGCGCgaacuggugCGUGGAGACCg -3'
miRNA:   3'- gCGa-GCG--CUCuCGCGa--------GUAUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 102800 0.69 0.848702
Target:  5'- aGCUCaaGaAGAcGCGCUCGUAGaAGugCu -3'
miRNA:   3'- gCGAGcgC-UCU-CGCGAGUAUC-UCugG- -5'
9606 3' -54.8 NC_002577.1 + 98390 0.69 0.848702
Target:  5'- gCGuCUC-CGAGAGCGUaUAUGGAGugGCCu -3'
miRNA:   3'- -GC-GAGcGCUCUCGCGaGUAUCUC--UGG- -5'
9606 3' -54.8 NC_002577.1 + 101177 0.7 0.797841
Target:  5'- gCGUUCG-GGGGGCGUUUc-GGGGACCg -3'
miRNA:   3'- -GCGAGCgCUCUCGCGAGuaUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 163081 0.7 0.797841
Target:  5'- gGC-CGCGcGGGCGCUCGcu-AGGCCg -3'
miRNA:   3'- gCGaGCGCuCUCGCGAGUaucUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 134247 0.7 0.797841
Target:  5'- gGC-CGCGcGGGCGCUCGcu-AGGCCg -3'
miRNA:   3'- gCGaGCGCuCUCGCGAGUaucUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 157069 0.7 0.779607
Target:  5'- gGCUCGCGAcGGCGCgac-GGAG-CCg -3'
miRNA:   3'- gCGAGCGCUcUCGCGaguaUCUCuGG- -5'
9606 3' -54.8 NC_002577.1 + 140269 0.7 0.779607
Target:  5'- gGCUCGCGAcGGCGCgac-GGAG-CCg -3'
miRNA:   3'- gCGAGCGCUcUCGCGaguaUCUCuGG- -5'
9606 3' -54.8 NC_002577.1 + 1037 0.71 0.770288
Target:  5'- -uUUCGCGGGGG-GCUgGcGGAGACCg -3'
miRNA:   3'- gcGAGCGCUCUCgCGAgUaUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 132576 0.71 0.770288
Target:  5'- -uUUCGCGGGGG-GCUgGcGGAGACCg -3'
miRNA:   3'- gcGAGCGCUCUCgCGAgUaUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 81264 0.71 0.751291
Target:  5'- gGC-CGCGGGcguGGCGCagCAcGGGGACCg -3'
miRNA:   3'- gCGaGCGCUC---UCGCGa-GUaUCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 161668 0.71 0.731877
Target:  5'- gGCUgCGagguaggaGAGAGCGgUCAUuGGGACCg -3'
miRNA:   3'- gCGA-GCg-------CUCUCGCgAGUAuCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 135670 0.71 0.731877
Target:  5'- gGCUgCGagguaggaGAGAGCGgUCAUuGGGACCg -3'
miRNA:   3'- gCGA-GCg-------CUCUCGCgAGUAuCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 122117 0.74 0.610664
Target:  5'- cCGUUCGCGGGAagcgccggaccgGCGCUCuaagcGGAGAUCc -3'
miRNA:   3'- -GCGAGCGCUCU------------CGCGAGua---UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 11497 0.74 0.610664
Target:  5'- cCGUUCGCGGGAagcgccggaccgGCGCUCuaagcGGAGAUCc -3'
miRNA:   3'- -GCGAGCGCUCU------------CGCGAGua---UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 155445 0.75 0.550022
Target:  5'- cCGCccUCGgGAGAGUGCUCGcccGGGGGCUa -3'
miRNA:   3'- -GCG--AGCgCUCUCGCGAGUa--UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 141892 0.75 0.550022
Target:  5'- cCGCccUCGgGAGAGUGCUCGcccGGGGGCUa -3'
miRNA:   3'- -GCG--AGCgCUCUCGCGAGUa--UCUCUGG- -5'
9606 3' -54.8 NC_002577.1 + 33505 1.12 0.00269
Target:  5'- cCGCUCGCGAGAGCGCUCAUAGAGACCu -3'
miRNA:   3'- -GCGAGCGCUCUCGCGAGUAUCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.