Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9607 | 3' | -62.2 | NC_002577.1 | + | 35565 | 1.07 | 0.001139 |
Target: 5'- gCCAGAAAGCCGGGGCGCGGCCGCGAAa -3' miRNA: 3'- -GGUCUUUCGGCCCCGCGCCGGCGCUU- -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 138493 | 0.81 | 0.08423 |
Target: 5'- gCCAG-AGGCCGcGGcCGCGGCCGCGGAg -3' miRNA: 3'- -GGUCuUUCGGCcCC-GCGCCGGCGCUU- -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 158844 | 0.81 | 0.08423 |
Target: 5'- gCCAG-AGGCCGcGGcCGCGGCCGCGGAg -3' miRNA: 3'- -GGUCuUUCGGCcCC-GCGCCGGCGCUU- -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 159775 | 0.75 | 0.210222 |
Target: 5'- aCCcGAcGGUCcGGGCGCGGUCGCGGAa -3' miRNA: 3'- -GGuCUuUCGGcCCCGCGCCGGCGCUU- -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 137562 | 0.75 | 0.210222 |
Target: 5'- aCCcGAcGGUCcGGGCGCGGUCGCGGAa -3' miRNA: 3'- -GGuCUuUCGGcCCCGCGCCGGCGCUU- -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 124287 | 0.74 | 0.230926 |
Target: 5'- gCUAGGcuGGcCCGGGGCGCGGaCGCGGu -3' miRNA: 3'- -GGUCUu-UC-GGCCCCGCGCCgGCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 9327 | 0.74 | 0.230926 |
Target: 5'- gCUAGGcuGGcCCGGGGCGCGGaCGCGGu -3' miRNA: 3'- -GGUCUu-UC-GGCCCCGCGCCgGCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 10541 | 0.74 | 0.253323 |
Target: 5'- -gGGAAAGUCGGGGgGCGacCCGCGAc -3' miRNA: 3'- ggUCUUUCGGCCCCgCGCc-GGCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 123073 | 0.74 | 0.253323 |
Target: 5'- -gGGAAAGUCGGGGgGCGacCCGCGAc -3' miRNA: 3'- ggUCUUUCGGCCCCgCGCc-GGCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 158328 | 0.73 | 0.265176 |
Target: 5'- gCGGAAAGCgCGGGagggaGCGCGGUgGCGGg -3' miRNA: 3'- gGUCUUUCG-GCCC-----CGCGCCGgCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 139009 | 0.73 | 0.265176 |
Target: 5'- gCGGAAAGCgCGGGagggaGCGCGGUgGCGGg -3' miRNA: 3'- gGUCUUUCG-GCCC-----CGCGCCGgCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 121857 | 0.71 | 0.368502 |
Target: 5'- gCCGGAGGGCgCGgaccGGGCGCGGaCCcggGCGAc -3' miRNA: 3'- -GGUCUUUCG-GC----CCCGCGCC-GG---CGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 11757 | 0.71 | 0.368502 |
Target: 5'- gCCGGAGGGCgCGgaccGGGCGCGGaCCcggGCGAc -3' miRNA: 3'- -GGUCUUUCG-GC----CCCGCGCC-GG---CGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 125667 | 0.7 | 0.39222 |
Target: 5'- -gGGGGAGCgCGGaGCGCGGgCGCGGg -3' miRNA: 3'- ggUCUUUCG-GCCcCGCGCCgGCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 7947 | 0.7 | 0.39222 |
Target: 5'- -gGGGGAGCgCGGaGCGCGGgCGCGGg -3' miRNA: 3'- ggUCUUUCG-GCCcCGCGCCgGCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 159262 | 0.69 | 0.442524 |
Target: 5'- aCAGuucGCC-GGGCGCGGCCGUc-- -3' miRNA: 3'- gGUCuuuCGGcCCCGCGCCGGCGcuu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 138076 | 0.69 | 0.442524 |
Target: 5'- aCAGuucGCC-GGGCGCGGCCGUc-- -3' miRNA: 3'- gGUCuuuCGGcCCCGCGCCGGCGcuu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 53695 | 0.69 | 0.478011 |
Target: 5'- gCCGGAcauGUCGGacGUGCGGCCGUGGu -3' miRNA: 3'- -GGUCUuu-CGGCCc-CGCGCCGGCGCUu -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 129991 | 0.69 | 0.478011 |
Target: 5'- -aAGAAguAGCCGGGcGCgaaGCGGCUGgGAAu -3' miRNA: 3'- ggUCUU--UCGGCCC-CG---CGCCGGCgCUU- -5' |
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9607 | 3' | -62.2 | NC_002577.1 | + | 161725 | 0.68 | 0.496273 |
Target: 5'- uCCAGcuaaAAAGUCGGGGCcggGCGGCCucugGCGc- -3' miRNA: 3'- -GGUC----UUUCGGCCCCG---CGCCGG----CGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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