miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9607 3' -62.2 NC_002577.1 + 5249 0.67 0.601268
Target:  5'- cUCGGAacGAGUCGGGGaa-GGgCGCGAAa -3'
miRNA:   3'- -GGUCU--UUCGGCCCCgcgCCgGCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 153752 0.67 0.591503
Target:  5'- aCGGGGcagcuucgcgcAGUCGGGGCGCGGagUGUGGGu -3'
miRNA:   3'- gGUCUU-----------UCGGCCCCGCGCCg-GCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 142944 0.67 0.581766
Target:  5'- cCUAGuguGGGaCCGGGGCGUG-CgGCGAGc -3'
miRNA:   3'- -GGUCu--UUC-GGCCCCGCGCcGgCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 11050 0.67 0.578851
Target:  5'- -gAGggGGgCGGcguuucuagcccccGGCGCgGGCCGCGGc -3'
miRNA:   3'- ggUCuuUCgGCC--------------CCGCG-CCGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 122563 0.67 0.578851
Target:  5'- -gAGggGGgCGGcguuucuagcccccGGCGCgGGCCGCGGc -3'
miRNA:   3'- ggUCuuUCgGCC--------------CCGCG-CCGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 134555 0.67 0.562396
Target:  5'- cCCGGGAAccgaaaCCGcGGGCGCGgaGCCGUGGc -3'
miRNA:   3'- -GGUCUUUc-----GGC-CCCGCGC--CGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 162773 0.67 0.562396
Target:  5'- cCCGGGAAccgaaaCCGcGGGCGCGgaGCCGUGGc -3'
miRNA:   3'- -GGUCUUUc-----GGC-CCCGCGC--CGGCGCUu -5'
9607 3' -62.2 NC_002577.1 + 16502 0.68 0.552776
Target:  5'- --uGAGGGCgGGGGgGuUGGCCGgGAGg -3'
miRNA:   3'- gguCUUUCGgCCCCgC-GCCGGCgCUU- -5'
9607 3' -62.2 NC_002577.1 + 3622 0.68 0.543205
Target:  5'- -aAGAAguAGCCGGGcGCgaaGCGGCUGgGAu -3'
miRNA:   3'- ggUCUU--UCGGCCC-CG---CGCCGGCgCUu -5'
9607 3' -62.2 NC_002577.1 + 4645 0.68 0.53369
Target:  5'- ---cGAGGCCGGGccGCGCugcagggauGGCCGCGGGu -3'
miRNA:   3'- ggucUUUCGGCCC--CGCG---------CCGGCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 128968 0.68 0.53369
Target:  5'- ---cGAGGCCGGGccGCGCugcagggauGGCCGCGGGu -3'
miRNA:   3'- ggucUUUCGGCCC--CGCG---------CCGGCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 10689 0.68 0.524235
Target:  5'- uCCGGAc-GCCGcgaGGGuCGCGGCC-CGAAg -3'
miRNA:   3'- -GGUCUuuCGGC---CCC-GCGCCGGcGCUU- -5'
9607 3' -62.2 NC_002577.1 + 122925 0.68 0.524235
Target:  5'- uCCGGAc-GCCGcgaGGGuCGCGGCC-CGAAg -3'
miRNA:   3'- -GGUCUuuCGGC---CCC-GCGCCGGcGCUU- -5'
9607 3' -62.2 NC_002577.1 + 136322 0.68 0.514844
Target:  5'- aCCGGAGAgcGCCGccuGGGCG-GGCCgGUGGAg -3'
miRNA:   3'- -GGUCUUU--CGGC---CCCGCgCCGG-CGCUU- -5'
9607 3' -62.2 NC_002577.1 + 161016 0.68 0.514844
Target:  5'- aCCGGAGAgcGCCGccuGGGCG-GGCCgGUGGAg -3'
miRNA:   3'- -GGUCUUU--CGGC---CCCGCgCCGG-CGCUU- -5'
9607 3' -62.2 NC_002577.1 + 141222 0.68 0.505522
Target:  5'- aCGGAucucCCGGGGUggcggGUGGCUGCGGAg -3'
miRNA:   3'- gGUCUuuc-GGCCCCG-----CGCCGGCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 93556 0.68 0.505522
Target:  5'- --cGAGAGUCGcGuGGUGCGGCUGCGc- -3'
miRNA:   3'- gguCUUUCGGC-C-CCGCGCCGGCGCuu -5'
9607 3' -62.2 NC_002577.1 + 156116 0.68 0.505522
Target:  5'- aCGGAucucCCGGGGUggcggGUGGCUGCGGAg -3'
miRNA:   3'- gGUCUuuc-GGCCCCG-----CGCCGGCGCUU- -5'
9607 3' -62.2 NC_002577.1 + 105985 0.68 0.505522
Target:  5'- aCCGcGAucaucAGCgCGGGGagagaGCGGCCGCGc- -3'
miRNA:   3'- -GGU-CUu----UCG-GCCCCg----CGCCGGCGCuu -5'
9607 3' -62.2 NC_002577.1 + 135613 0.68 0.496273
Target:  5'- uCCAGcuaaAAAGUCGGGGCcggGCGGCCucugGCGc- -3'
miRNA:   3'- -GGUC----UUUCGGCCCCG---CGCCGG----CGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.