miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9608 3' -49.7 NC_002577.1 + 6570 0.66 0.998152
Target:  5'- ---cGGGGAGUGGGGCgGCGg--UCc -3'
miRNA:   3'- uauaUCUCUCGCUCUGgCGCauaAGc -5'
9608 3' -49.7 NC_002577.1 + 127044 0.66 0.998152
Target:  5'- ---cGGGGAGUGGGGCgGCGg--UCc -3'
miRNA:   3'- uauaUCUCUCGCUCUGgCGCauaAGc -5'
9608 3' -49.7 NC_002577.1 + 48055 0.66 0.997365
Target:  5'- --cUAGAGcuCGAGACCGCGg----- -3'
miRNA:   3'- uauAUCUCucGCUCUGGCGCauaagc -5'
9608 3' -49.7 NC_002577.1 + 23003 0.67 0.994947
Target:  5'- uUGUuuuAGGGCGGGACUGCGUG--CGg -3'
miRNA:   3'- uAUAuc-UCUCGCUCUGGCGCAUaaGC- -5'
9608 3' -49.7 NC_002577.1 + 154639 0.67 0.994122
Target:  5'- ---aAGGGAGaCGuGACCGCGg--UCa -3'
miRNA:   3'- uauaUCUCUC-GCuCUGGCGCauaAGc -5'
9608 3' -49.7 NC_002577.1 + 142698 0.67 0.994122
Target:  5'- ---aAGGGAGaCGuGACCGCGg--UCa -3'
miRNA:   3'- uauaUCUCUC-GCuCUGGCGCauaAGc -5'
9608 3' -49.7 NC_002577.1 + 19823 0.67 0.993192
Target:  5'- ---aGGAGAGCGGcGCgGCaugGUAUUCGg -3'
miRNA:   3'- uauaUCUCUCGCUcUGgCG---CAUAAGC- -5'
9608 3' -49.7 NC_002577.1 + 123065 0.68 0.986642
Target:  5'- ---cGGGGGGCGAcccgcGACCGUGUuccgcgagcggcGUUCGg -3'
miRNA:   3'- uauaUCUCUCGCU-----CUGGCGCA------------UAAGC- -5'
9608 3' -49.7 NC_002577.1 + 10549 0.68 0.986642
Target:  5'- ---cGGGGGGCGAcccgcGACCGUGUuccgcgagcggcGUUCGg -3'
miRNA:   3'- uauaUCUCUCGCU-----CUGGCGCA------------UAAGC- -5'
9608 3' -49.7 NC_002577.1 + 136296 0.69 0.984886
Target:  5'- -gGUGGAGAGCGGcGCCGgaCGU-UUCGg -3'
miRNA:   3'- uaUAUCUCUCGCUcUGGC--GCAuAAGC- -5'
9608 3' -49.7 NC_002577.1 + 161042 0.69 0.984886
Target:  5'- -gGUGGAGAGCGGcGCCGgaCGU-UUCGg -3'
miRNA:   3'- uaUAUCUCUCGCUcUGGC--GCAuAAGC- -5'
9608 3' -49.7 NC_002577.1 + 154833 0.69 0.978562
Target:  5'- ---gGGAGAGaCGuGACCGCGg--UCa -3'
miRNA:   3'- uauaUCUCUC-GCuCUGGCGCauaAGc -5'
9608 3' -49.7 NC_002577.1 + 142504 0.69 0.978561
Target:  5'- ---gGGAGAGaCGuGACCGCGg--UCa -3'
miRNA:   3'- uauaUCUCUC-GCuCUGGCGCauaAGc -5'
9608 3' -49.7 NC_002577.1 + 2783 0.71 0.943558
Target:  5'- uUGUGGuGGGCGuGACCGCGca-UCGc -3'
miRNA:   3'- uAUAUCuCUCGCuCUGGCGCauaAGC- -5'
9608 3' -49.7 NC_002577.1 + 130830 0.71 0.943557
Target:  5'- uUGUGGuGGGCGuGACCGCGca-UCGc -3'
miRNA:   3'- uAUAUCuCUCGCuCUGGCGCauaAGC- -5'
9608 3' -49.7 NC_002577.1 + 110667 0.73 0.897603
Target:  5'- --uUAGAGGGUcgGAGACCGCGUuuaaaucuccucGUUCa -3'
miRNA:   3'- uauAUCUCUCG--CUCUGGCGCA------------UAAGc -5'
9608 3' -49.7 NC_002577.1 + 40425 1.07 0.01674
Target:  5'- cAUAUAGAGAGCGAGACCGCGUAUUCGc -3'
miRNA:   3'- -UAUAUCUCUCGCUCUGGCGCAUAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.